Author name cluster

Yair Schiff

Possible papers associated with this exact author name in Arrow. This page groups case-insensitive exact name matches and is not a full identity disambiguation profile.

13 papers

2 author rows

NeurIPS Conference 2025 Conference Paper

Encoder-Decoder Diffusion Language Models for Efficient Training and Inference

Marianne Arriola
Yair Schiff
Hao Phung
Aaron Gokaslan
Volodymyr Kuleshov

Discrete diffusion models enable parallel token sampling for faster inference than autoregressive approaches. However, prior diffusion models use a decoder-only architecture, which requires sampling algorithms that invoke the full network at every denoising step and incur high computational cost. Our key insight is that discrete diffusion models perform two types of computation: 1) representing clean tokens and 2) denoising corrupted tokens, which enables us to use separate modules for each task. We propose an encoder-decoder architecture to accelerate discrete diffusion inference, which relies on an encoder to represent clean tokens and a lightweight decoder to iteratively refine a noised sequence. We also show that this architecture enables faster training of block diffusion models, which partition sequences into blocks for better quality and are commonly used in diffusion language model inference. We introduce a framework for E fficient E ncoder- D ecoder D iffusion (E2D2), consisting of an architecture with specialized training and sampling algorithms, and we show that E2D2 achieves superior trade-offs between generation quality and inference throughput on summarization, translation, and mathematical reasoning tasks.

PDF Details

NeurIPS Conference 2025 Conference Paper

Remasking Discrete Diffusion Models with Inference-Time Scaling

Guanghan Wang
Yair Schiff
Subham Sahoo
Volodymyr Kuleshov

Part of the success of diffusion models stems from their ability to perform iterative refinement, i. e. , repeatedly correcting outputs during generation. However, modern masked discrete diffusion lacks this capability: when a token is generated, it cannot be updated again, even when it introduces an error. Here, we address this limitation by introducing the remasking diffusion model (ReMDM) sampler, a method that can be applied to pretrained masked diffusion models in a principled way and that is derived from a discrete diffusion model with a custom remasking backward process. Most interestingly, ReMDM endows discrete diffusion with a form of inference-time compute scaling. By increasing the number of sampling steps, ReMDM generates natural language outputs that approach the quality of autoregressive models, whereas when the computation budget is limited, ReMDM better maintains quality. ReMDM also improves sample quality of masked diffusion models for discretized images, and in scientific domains such as molecule design, ReMDM facilitates diffusion guidance and pushes the Pareto frontier of controllability relative to classical masking and uniform noise diffusion. When applied to large pretrained diffusion language models, ReMDM boosts the model’s performance on downstream tasks requiring factual knowledge grasp and reasoning ability.

PDF Details

ICLR Conference 2025 Conference Paper

Simple Guidance Mechanisms for Discrete Diffusion Models

Yair Schiff
Subham Sekhar Sahoo
Hao Phung
Guanghan Wang
Sam Boshar
Hugo Dalla-torre
Bernardo P. de Almeida
Alexander M. Rush

Diffusion models for continuous data gained widespread adoption owing to their high quality generation and control mechanisms. However, controllable diffusion on discrete data faces challenges given that continuous guidance methods do not directly apply to discrete diffusion. Here, we provide a straightforward derivation of classifier-free and classifier-based guidance for discrete diffusion, as well as a new class of diffusion models that leverage uniform noise and that are more guidable because they can continuously edit their outputs. We improve the quality of these models with a novel continuous-time variational lower bound that yields state-of-the-art performance, especially in settings involving guidance or fast generation. Empirically, we demonstrate that our guidance mechanisms combined with uniform noise diffusion improve controllable generation relative to autoregressive and diffusion baselines on several discrete data domains, including genomic sequences, small molecule design, and discretized image generation.

Details

ICML Conference 2024 Conference Paper

Caduceus: Bi-Directional Equivariant Long-Range DNA Sequence Modeling

Yair Schiff
Chia-Hsiang Kao
Aaron Gokaslan
Tri Dao
Albert Gu
Volodymyr Kuleshov

Large-scale sequence modeling has sparked rapid advances that now extend into biology and genomics. However, modeling genomic sequences introduces challenges such as the need to model long-range token interactions, the effects of upstream and downstream regions of the genome, and the reverse complementarity (RC) of DNA. Here, we propose an architecture motivated by these challenges that builds off the long-range Mamba block, and extends it to a BiMamba component that supports bi-directionality, and to a MambaDNA block that additionally supports RC equivariance. We use MambaDNA as the basis of Caduceus, the first family of RC equivariant bi-directional long-range DNA language models, and we introduce pre-training and fine-tuning strategies that yield Caduceus DNA foundation models. Caduceus outperforms previous long-range models on downstream benchmarks; on a challenging long-range variant effect prediction task, Caduceus exceeds the performance of 10x larger models that do not leverage bi-directionality or equivariance. Code to reproduce our experiments is available here: https: //github. com/kuleshov-group/caduceus.

Details

ICML Conference 2024 Conference Paper

DySLIM: Dynamics Stable Learning by Invariant Measure for Chaotic Systems

Yair Schiff
Zhong Yi Wan
Jeffrey B. Parker
Stephan Hoyer
Volodymyr Kuleshov
Fei Sha
Leonardo Zepeda-Núñez

Learning dynamics from dissipative chaotic systems is notoriously difficult due to their inherent instability, as formalized by their positive Lyapunov exponents, which exponentially amplify errors in the learned dynamics. However, many of these systems exhibit ergodicity and an attractor: a compact and highly complex manifold, to which trajectories converge in finite-time, that supports an invariant measure, i. e. , a probability distribution that is invariant under the action of the dynamics, which dictates the long-term statistical behavior of the system. In this work, we leverage this structure to propose a new framework that targets learning the invariant measure as well as the dynamics, in contrast with typical methods that only target the misfit between trajectories, which often leads to divergence as the trajectories’ length increases. We use our framework to propose a tractable and sample efficient objective that can be used with any existing learning objectives. Our Dy namics S table L earning by I nvariant M easure (DySLIM) objective enables model training that achieves better point-wise tracking and long-term statistical accuracy relative to other learning objectives. By targeting the distribution with a scalable regularization term, we hope that this approach can be extended to more complex systems exhibiting slowly-variant distributions, such as weather and climate models. Code to reproduce our experiments is available here: https: //github. com/google-research/swirl-dynamics/tree/main/swirl_dynamics/projects/ergodic.

Details

NeurIPS Conference 2024 Conference Paper

Simple and Effective Masked Diffusion Language Models

Subham S. Sahoo
Marianne Arriola
Yair Schiff
Aaron Gokaslan
Edgar Marroquin
Justin T. Chiu
Alexander Rush
Volodymyr Kuleshov

While diffusion models excel at generating high-quality images, prior work reports a significant performance gap between diffusion and autoregressive (AR) methods in language modeling. In this work, we show that simple masked discrete diffusion is more performant than previously thought. We apply an effective training recipe that improves the performance of masked diffusion models and derive a simplified, Rao-Blackwellized objective that results in additional improvements. Our objective has a simple form-it is a mixture of classical masked language modeling losses-and can be used to train encoder-only language models that admit efficient samplers, including ones that can generate arbitrary lengths of text semi-autoregressively like a traditional language model. On language modeling benchmarks, a range of masked diffusion models trained with modern engineering practices achieves a new state-of-the-art among diffusion models, and approaches AR perplexity. We provide the code, along with a blog post and video tutorial on the project page: https: //s-sahoo. com/mdlm

PDF Details DOI

ICML Conference 2023 Conference Paper

InfoDiffusion: Representation Learning Using Information Maximizing Diffusion Models

Yingheng Wang
Yair Schiff
Aaron Gokaslan
Weishen Pan
Fei Wang 0001
Christopher De Sa
Volodymyr Kuleshov

While diffusion models excel at generating high-quality samples, their latent variables typically lack semantic meaning and are not suitable for representation learning. Here, we propose InfoDiffusion, an algorithm that augments diffusion models with low-dimensional latent variables that capture high-level factors of variation in the data. InfoDiffusion relies on a learning objective regularized with the mutual information between observed and hidden variables, which improves latent space quality and prevents the latents from being ignored by expressive diffusion-based decoders. Empirically, we find that InfoDiffusion learns disentangled and human-interpretable latent representations that are competitive with state-of-the-art generative and contrastive methods, while retaining the high sample quality of diffusion models. Our method enables manipulating the attributes of generated images and has the potential to assist tasks that require exploring a learned latent space to generate quality samples, e. g. , generative design.

Details

ICLR Conference 2023 Conference Paper

Learning with Stochastic Orders

Carles Domingo-Enrich
Yair Schiff
Youssef Mroueh

Learning high-dimensional distributions is often done with explicit likelihood modeling or implicit modeling via minimizing integral probability metrics (IPMs). In this paper, we expand this learning paradigm to stochastic orders, namely, the convex or Choquet order between probability measures. Towards this end, exploiting the relation between convex orders and optimal transport, we introduce the Choquet-Toland distance between probability measures, that can be used as a drop-in replacement for IPMs. We also introduce the Variational Dominance Criterion (VDC) to learn probability measures with dominance constraints, that encode the desired stochastic order between the learned measure and a known baseline. We analyze both quantities and show that they suffer from the curse of dimensionality and propose surrogates via input convex maxout networks (ICMNs), that enjoy parametric rates. We provide a min-max framework for learning with stochastic orders and validate it experimentally on synthetic and high-dimensional image generation, with promising results. Finally, our ICMNs class of convex functions and its derived Rademacher Complexity are of independent interest beyond their application in convex orders. Code to reproduce experimental results is available at https://github.com/yair-schiff/stochastic-orders-ICMN.

Details

ICML Conference 2023 Conference Paper

Semi-Autoregressive Energy Flows: Exploring Likelihood-Free Training of Normalizing Flows

Phillip Si
Zeyi Chen
Subham Sekhar Sahoo
Yair Schiff
Volodymyr Kuleshov

Training normalizing flow generative models can be challenging due to the need to calculate computationally expensive determinants of Jacobians. This paper studies the likelihood-free training of flows and proposes the energy objective, an alternative sample-based loss based on proper scoring rules. The energy objective is determinant-free and supports flexible model architectures that are not easily compatible with maximum likelihood training, including semi-autoregressive energy flows, a novel model family that interpolates between fully autoregressive and non-autoregressive models. Energy flows feature competitive sample quality, posterior inference, and generation speed relative to likelihood-based flows; this performance is decorrelated from the quality of log-likelihood estimates, which are generally very poor. Our findings question the use of maximum likelihood as an objective or a metric, and contribute to a scientific study of its role in generative modeling. Code is available at https: //github. com/ps789/SAEF.

Details

ICLR Conference 2023 Conference Paper

Semi-Parametric Inducing Point Networks and Neural Processes

Richa Rastogi
Yair Schiff
Alon Hacohen
Zhaozhi Li
Ian Lee
Yuntian Deng
Mert R. Sabuncu
Volodymyr Kuleshov

We introduce semi-parametric inducing point networks (SPIN), a general-purpose architecture that can query the training set at inference time in a compute-efficient manner. Semi-parametric architectures are typically more compact than parametric models, but their computational complexity is often quadratic. In contrast, SPIN attains linear complexity via a cross-attention mechanism between datapoints inspired by inducing point methods. Querying large training sets can be particularly useful in meta-learning, as it unlocks additional training signal, but often exceeds the scaling limits of existing models. We use SPIN as the basis of the Inducing Point Neural Process, a probabilistic model which supports large contexts in meta-learning and achieves high accuracy where existing models fail. In our experiments, SPIN reduces memory requirements, improves accuracy across a range of meta-learning tasks, and improves state-of-the-art performance on an important practical problem, genotype imputation.

Details

JAIR Journal 2022 Journal Article

Image Captioning as an Assistive Technology: Lessons Learned from VizWiz 2020 Challenge

Pierre Dognin
Igor Melnyk
Youssef Mroueh
Inkit Padhi
Mattia Rigotti
Jarret Ross
Yair Schiff
Richard A. Young

Image captioning has recently demonstrated impressive progress largely owing to the introduction of neural network algorithms trained on curated dataset like MS-COCO. Often work in this field is motivated by the promise of deployment of captioning systems in practical applications. However, the scarcity of data and contexts in many competition datasets renders the utility of systems trained on these datasets limited as an assistive technology in real-world settings, such as helping visually impaired people navigate and accomplish everyday tasks. This gap motivated the introduction of the novel VizWiz dataset, which consists of images taken by the visually impaired and captions that have useful, task-oriented information. In an attempt to help the machine learning computer vision field realize its promise of producing technologies that have positive social impact, the curators of the VizWiz dataset host several competitions, including one for image captioning. This work details the theory and engineering from our winning submission to the 2020 captioning competition. Our work provides a step towards improved assistive image captioning systems. This article appears in the special track on AI & Society.

PDF Details DOI

TMLR Journal 2022 Journal Article

Optimizing Functionals on the Space of Probabilities with Input Convex Neural Networks

David Alvarez-Melis
Yair Schiff
Youssef Mroueh

Gradient flows are a powerful tool for optimizing functionals in general metric spaces, including the space of probabilities endowed with the Wasserstein metric. A typical approach to solving this optimization problem relies on its connection to the dynamic formulation of optimal transport and the celebrated Jordan-Kinderlehrer-Otto (JKO) scheme. However, this formulation involves optimization over convex functions, which is challenging, especially in high dimensions. In this work, we propose an approach that relies on the recently introduced input-convex neural networks (ICNN) to parametrize the space of convex functions in order to approximate the JKO scheme, as well as in designing functionals over measures that enjoy convergence guarantees. We derive a computationally efficient implementation of this JKO-ICNN framework and experimentally demonstrate its feasibility and validity in approximating solutions of low-dimensional partial differential equations with known solutions. We also demonstrate its viability in high-dimensional applications through an experiment in controlled generation for molecular discovery.

PDF Details

NeurIPS Conference 2021 Conference Paper

Predicting Deep Neural Network Generalization with Perturbation Response Curves

Yair Schiff
Brian Quanz
Payel Das
Pin-Yu Chen

The field of Deep Learning is rich with empirical evidence of human-like performance on a variety of prediction tasks. However, despite these successes, the recent Predicting Generalization in Deep Learning (PGDL) NeurIPS 2020 competition suggests that there is a need for more robust and efficient measures of network generalization. In this work, we propose a new framework for evaluating the generalization capabilities of trained networks. We use perturbation response (PR) curves that capture the accuracy change of a given network as a function of varying levels of training sample perturbation. From these PR curves, we derive novel statistics that capture generalization capability. Specifically, we introduce two new measures for accurately predicting generalization gaps: the Gi-score and Pal-score, which are inspired by the Gini coefficient and Palma ratio (measures of income inequality), that accurately predict generalization gaps. Using our framework applied to intra and inter-class sample mixup, we attain better predictive scores than the current state-of-the-art measures on a majority of tasks in the PGDL competition. In addition, we show that our framework and the proposed statistics can be used to capture to what extent a trained network is invariant to a given parametric input transformation, such as rotation or translation. Therefore, these generalization gap prediction statistics also provide a useful means for selecting optimal network architectures and hyperparameters that are invariant to a certain perturbation.

PDF Details