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Yun Song

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7 papers

1 author row

AAAI Conference 2026 Conference Paper

Firing Bits Where It Matters: Spiking-Guided Just Recognizable Distortion Modeling for Machine-Centric Video Coding

Wuyuan Xie
Zhenming Li
Yuwu Lu
Di Lin
Yun Song
Miaohui Wang

Just recognizable distortion (JRD) has emerged as a promising paradigm for machine-centric video coding. However, existing JRD-guided coding methods are limited by coarse annotation granularity and high computational cost, which hinder their deployment. In this paper, we first investigate the impact of different JRD annotation strategies on downstream task performance. By incorporating both instance-level and contextual information, we construct a new JRD dataset with fine-grained annotations compatible with object detection and instance segmentation tasks. To enhance quantization parameter (QP) map prediction while maintaining computational efficiency, we propose a novel spiking neural network (SNN)-based framework that decomposes video frames into spatial structures, channel interactions, and temporal patterns. Furthermore, we introduce a spiking attention mechanism to aggregate task-relevant features and employ adaptive scaling vectors to suppress machine-perceived redundancy, enabling targeted bitrate allocation aligned with task-critical content. Extensive experiments on multiple datasets and backbones demonstrate that our approach consistently outperforms state-of-the-art codec-based and JRD-guided methods in maintaining task performance at ultra-low bitrates, while significantly reducing computational overhead.

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AAAI Conference 2026 Conference Paper

Perceive More with Less: LiDAR Point Cloud Compression at Just Recognizable Distortion for 3D Scene Understanding

Miaohui Wang
Runnan Huang
Taojun Liu
Shuyuan Lin
Ye Liu
Yun Song

Existing LiDAR point cloud (LPC) data coding methods primarily focus on balancing compression efficiency and reconstruction quality according to the human vision system (HVS). However, these methods rarely consider the requirements of downstream scene understanding tasks from the perspective of the machine vision system (MVS). To address this challenge, we explore the maximum degree of LPC compression that has negligible impact on perception accuracy, called LPC-based just recognizable compression distortion (lpcJRCD). Specifically, we introduce a novel point-wise quantization approach for constructing a MVS-based LiDAR dataset and present a new lpcJRCD-guided intelligent compression framework tailored for MVS applications. To enhance MVS-based LPC compression efficiency, we develop a dual-feature interaction (DFI) module that fuses point and voxel features. Additionally, we propose a mask-based loss function to ensure accurate point-wise quality level prediction. Experimental results demonstrate the effectiveness of our proposed model in reducing the average bit rate by up to 94.98% while preserving perception accuracy in autonomous vehicles.

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AAAI Conference 2026 Conference Paper

The Last Byte: Learning Just Enough for Machine-Oriented Image Compression

Wuyuan Xie
Zhenming Li
Ye Liu
Jian Jin
Yun Song
Miaohui Wang

Just recognizable distortion (JRD) has been introduced for image compression for machines, aiming to quantify the maximum coding distortion that can be tolerated by a specific perception model, thereby defining the upper bound of machine vision redundancy (MVR). However, existing JRD-based redundancy estimation methods face three key challenges: limited dataset annotation accuracy, low prediction efficiency, and insufficient perception accuracy, all of which hinder their practical deployment. To address these limitations, we propose a new MVR-Net, a frame-wise efficient JRD prediction method that generates the optimal encoding quantization map in a single inference pass. Furthermore, we refine the annotation standard for JRD datasets based on experimental insights, enhancing the precision of recognizable redundancy measurement. Compared to stateof-the-art methods, MVR-Net achieves a superior balance between bitrate reduction and perception accuracy in JRD-guided compression, while offering up to a 40,000× speed improvement, demonstrating its practicality and efficiency for real-world applications.

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AAAI Conference 2024 Conference Paper

msLPCC: A Multimodal-Driven Scalable Framework for Deep LiDAR Point Cloud Compression

Miaohui Wang
Runnan Huang
Hengjin Dong
Di Lin
Yun Song
Wuyuan Xie

LiDAR sensors are widely used in autonomous driving, and the growing storage and transmission demands have made LiDAR point cloud compression (LPCC) a hot research topic. To address the challenges posed by the large-scale and uneven-distribution (spatial and categorical) of LiDAR point data, this paper presents a new multimodal-driven scalable LPCC framework. For the large-scale challenge, we decouple the original LiDAR data into multi-layer point subsets, compress and transmit each layer separately, so as to ensure the reconstruction quality requirement under different scenarios. For the uneven-distribution challenge, we extract, align, and fuse heterologous feature representations, including point modality with position information, depth modality with spatial distance information, and segmentation modality with category information. Extensive experimental results on the benchmark SemanticKITTI database validate that our method outperforms 14 recent representative LPCC methods.

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NeurIPS Conference 2023 Conference Paper

CELLE-2: Translating Proteins to Pictures and Back with a Bidirectional Text-to-Image Transformer

Emaad Khwaja
Yun Song
Aaron Agarunov
Bo Huang

We present CELL-E 2, a novel bidirectional transformer that can generate images depicting protein subcellular localization from the amino acid sequences (and vice versa). Protein localization is a challenging problem that requires integrating sequence and image information, which most existing methods ignore. CELL-E 2 extends the work of CELL-E, not only capturing the spatial complexity of protein localization and produce probability estimates of localization atop a nucleus image, but also being able to generate sequences from images, enabling de novo protein design. We train and finetune CELL-E 2 on two large-scale datasets of human proteins. We also demonstrate how to use CELL-E 2 to create hundreds of novel nuclear localization signals (NLS). Results and interactive demos are featured at https: //bohuanglab. github. io/CELL-E_2/.

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NeurIPS Conference 2019 Conference Paper

Evaluating Protein Transfer Learning with TAPE

Roshan Rao
Nicholas Bhattacharya
Neil Thomas
Yan Duan
Peter Chen
John Canny
Pieter Abbeel
Yun Song

Protein modeling is an increasingly popular area of machine learning research. Semi-supervised learning has emerged as an important paradigm in protein modeling due to the high cost of acquiring supervised protein labels, but the current literature is fragmented when it comes to datasets and standardized evaluation techniques. To facilitate progress in this field, we introduce the Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. We curate tasks into specific training, validation, and test splits to ensure that each task tests biologically relevant generalization that transfers to real-life scenarios. We benchmark a range of approaches to semi-supervised protein representation learning, which span recent work as well as canonical sequence learning techniques. We find that self-supervised pretraining is helpful for almost all models on all tasks, more than doubling performance in some cases. Despite this increase, in several cases features learned by self-supervised pretraining still lag behind features extracted by state-of-the-art non-neural techniques. This gap in performance suggests a huge opportunity for innovative architecture design and improved modeling paradigms that better capture the signal in biological sequences. TAPE will help the machine learning community focus effort on scientifically relevant problems. Toward this end, all data and code used to run these experiments is available at https: //github. com/songlab-cal/tape

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NeurIPS Conference 2018 Conference Paper

A Likelihood-Free Inference Framework for Population Genetic Data using Exchangeable Neural Networks

Jeffrey Chan
Valerio Perrone
Jeffrey Spence
Paul Jenkins
Sara Mathieson
Yun Song

An explosion of high-throughput DNA sequencing in the past decade has led to a surge of interest in population-scale inference with whole-genome data. Recent work in population genetics has centered on designing inference methods for relatively simple model classes, and few scalable general-purpose inference techniques exist for more realistic, complex models. To achieve this, two inferential challenges need to be addressed: (1) population data are exchangeable, calling for methods that efficiently exploit the symmetries of the data, and (2) computing likelihoods is intractable as it requires integrating over a set of correlated, extremely high-dimensional latent variables. These challenges are traditionally tackled by likelihood-free methods that use scientific simulators to generate datasets and reduce them to hand-designed, permutation-invariant summary statistics, often leading to inaccurate inference. In this work, we develop an exchangeable neural network that performs summary statistic-free, likelihood-free inference. Our framework can be applied in a black-box fashion across a variety of simulation-based tasks, both within and outside biology. We demonstrate the power of our approach on the recombination hotspot testing problem, outperforming the state-of-the-art.

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