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Yongfeng Yang

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9 papers

1 author row

JBHI Journal 2025 Journal Article

Multistage Diffusion Model With Phase Error Correction for Fast PET Imaging

Yunlong Gao
Zhenxing Huang
Xingyu Xie
Wenjie Zhao
Qianyi Yang
Xinlan Yang
Yongfeng Yang
Hairong Zheng

Fast PET imaging is clinically important for reducing motion artifacts and improving patient comfort. While recent diffusion-based deep learning methods have shown promise, they often fail to capture the true PET degradation process, suffer from accumulated inference errors, introduce artifacts, and require extensive reconstruction iterations. To address these challenges, we propose a novel multistage diffusion framework tailored for fast PET imaging. At the coarse level, we design a multistage structure to approximate the temporal non-linear PET degradation process in a data-driven manner, using paired PET images collected under different acquisition duration. A Phase Error Correction Network (PECNet) ensures consistency across stages by correcting accumulated deviations. At the fine level, we introduce a deterministic cold diffusion mechanism, which simulates intra-stage degradation through interpolation between known acquisition durations—significantly reducing reconstruction iterations to as few as 10. Evaluations on [ 68 Ga]FAPI and [ 18 F]FDG PET datasets demonstrate the superiority of our approach, achieving peak PSNRs of 36. 2 dB and 39. 0 dB, respectively, with average SSIMs over 0. 97. Our framework offers high-fidelity PET imaging with fewer iterations, making it practical for accelerated clinical imaging.

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JBHI Journal 2024 Journal Article

Accurate Whole-Brain Image Enhancement for Low-Dose Integrated PET/MR Imaging Through Spatial Brain Transformation

Zhenxing Huang
Wenbo Li
Yaping Wu
Lin Yang
Yun Dong
Yongfeng Yang
Hairong Zheng
Dong Liang

Positron emission tomography/magnetic resonance imaging (PET/MRI) systems can provide precise anatomical and functional information with exceptional sensitivity and accuracy for neurological disorder detection. Nevertheless, the radiation exposure risks and economic costs of radiopharmaceuticals may pose significant burdens on patients. To mitigate image quality degradation during low-dose PET imaging, we proposed a novel 3D network equipped with a spatial brain transform (SBF) module for low-dose whole-brain PET and MR images to synthesize high-quality PET images. The FreeSurfer toolkit was applied to derive the spatial brain anatomical alignment information, which was then fused with low-dose PET and MR features through the SBF module. Moreover, several deep learning methods were employed as comparison measures to evaluate the model performance, with the peak signal-to-noise ratio (PSNR), structural similarity (SSIM) and Pearson correlation coefficient (PCC) serving as quantitative metrics. Both the visual results and quantitative results illustrated the effectiveness of our approach. The obtained PSNR and SSIM were $41. 96 \, \pm \, 4. 91$ dB (p $0. 9654 \, \pm \, 0. 0215$ (p < 0. 01), which achieved a 19% and 20% improvement, respectively, compared to the original low-dose brain PET images. The volume of interest (VOI) analysis of brain regions such as the left thalamus (PCC = 0. 959) also showed that the proposed method could achieve a more accurate standardized uptake value (SUV) distribution while preserving the details of brain structures. In future works, we hope to apply our method to other multimodal systems, such as PET/CT, to assist clinical brain disease diagnosis and treatment.

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JBHI Journal 2024 Journal Article

MMCA-NET: A Multimodal Cross Attention Transformer Network for Nasopharyngeal Carcinoma Tumor Segmentation Based on a Total-Body PET/CT System

Wenjie Zhao
Zhenxing Huang
Si Tang
Wenbo Li
Yunlong Gao
Yingying Hu
Wei Fan
Chuanli Cheng

Nasopharyngeal carcinoma (NPC) is a malignant tumor primarily treated by radiotherapy. Accurate delineation of the target tumor is essential for improving the effectiveness of radiotherapy. However, the segmentation performance of current models is unsatisfactory due to poor boundaries, large-scale tumor volume variation, and the labor-intensive nature of manual delineation for radiotherapy. In this paper, MMCA-Net, a novel segmentation network for NPC using PET/CT images that incorporates an innovative multimodal cross attention transformer (MCA-Transformer) and a modified U-Net architecture, is introduced to enhance modal fusion by leveraging cross-attention mechanisms between CT and PET data. Our method, tested against ten algorithms via fivefold cross-validation on samples from Sun Yat-sen University Cancer Center and the public HECKTOR dataset, consistently topped all four evaluation metrics with average Dice similarity coefficients of 0. 815 and 0. 7944, respectively. Furthermore, ablation experiments were conducted to demonstrate the superiority of our method over multiple baseline and variant techniques. The proposed method has promising potential for application in other tasks.

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YNICL Journal 2024 Journal Article

Right superior frontal gyrus: A potential neuroimaging biomarker for predicting short-term efficacy in schizophrenia

Yongfeng Yang
Xueyan Jin
Yongjiang Xue
Xue Li
Yi Chen
Ning Kang
Wei Yan
Peng Li

Antipsychotic drug treatment for schizophrenia (SZ) can alter brain structure and function, but it is unclear if specific regional changes are associated with treatment outcome. Therefore, we examined the effects of antipsychotic drug treatment on regional grey matter (GM) density, white matter (WM) density, and functional connectivity (FC) as well as associations between regional changes and treatment efficacy. SZ patients (n = 163) and health controls (HCs) (n = 131) were examined by structural magnetic resonance imaging (sMRI) at baseline, and a subset of SZ patients (n = 77) were re-examined after 8 weeks of second-generation antipsychotic treatment to assess changes in regional GM and WM density. In addition, 88 SZ patients and 81 HCs were examined by resting-state functional MRI (rs-fMRI) at baseline and the patients were re-examined post-treatment to examine FC changes. The Positive and Negative Syndrome Scale (PANSS) and MATRICS Consensus Cognitive Battery (MCCB) were applied to measure psychiatric symptoms and cognitive impairments in SZ. SZ patients were then stratified into response and non-response groups according to PANSS score change (≥50 % decrease or <50 % decrease, respectively). The GM density of the right cingulate gyrus, WM density of the right superior frontal gyrus (SFG) plus 5 other WM tracts were reduced in the response group compared to the non-response group. The FC values between the right anterior cingulate and paracingulate gyrus and left thalamus were reduced in the entire SZ group (n = 88) after treatment, while FC between the right inferior temporal gyrus (ITG) and right medial superior frontal gyrus (SFGmed) was increased in the response group. There were no significant changes in regional FC among the non-response group after treatment and no correlations with symptom or cognition test scores. These findings suggest that the right SFG is a critical target of antipsychotic drugs and that WM density and FC alterations within this region could be used as potential indicators in predicting the treatment outcome of antipsychotics of SZ.

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JBHI Journal 2023 Journal Article

A Two-Branch Neural Network for Short-Axis PET Image Quality Enhancement

Minghan Fu
Meiyun Wang
Yaping Wu
Na Zhang
Yongfeng Yang
Haining Wang
Yun Zhou
Yue Shang

The axial field of view (FOV) is a key factor that affects the quality of PET images. Due to hardware FOV restrictions, conventional short-axis PET scanners with FOVs of 20 to 35 cm can acquire only low-quality PET (LQ-PET) images in fast scanning times (2–3 minutes). To overcome hardware restrictions and improve PET image quality for better clinical diagnoses, several deep learning-based algorithms have been proposed. However, these approaches use simple convolution layers with residual learning and local attention, which insufficiently extract and fuse long-range contextual information. To this end, we propose a novel two-branch network architecture with swin transformer units and graph convolution operation, namely SW-GCN. The proposed SW-GCN provides additional spatial- and channel-wise flexibility to handle different types of input information flow. Specifically, considering the high computational cost of calculating self-attention weights in full-size PET images, in our designed spatial adaptive branch, we take the self-attention mechanism within each local partition window and introduce global information interactions between nonoverlapping windows by shifting operations to prevent the aforementioned problem. In addition, the convolutional network structure considers the information in each channel equally during the feature extraction process. In our designed channel adaptive branch, we use a Watts Strogatz topology structure to connect each feature map to only its most relevant features in each graph convolutional layer, substantially reducing information redundancy. Moreover, ensemble learning is adopted in our SW-GCN for mapping distinct features from the two well-designed branches to the enhanced PET images. We carried out extensive experiments on three single-bed position scans for 386 patients. The test results demonstrate that our proposed SW-GCN approach outperforms state-of-the-art methods in both quantitative and qualitative evaluations.

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YNICL Journal 2023 Journal Article

Cortical anatomical variations, gene expression profiles, and clinical phenotypes in patients with schizophrenia

Yong Han
Yongfeng Yang
Zhilu Zhou
Xueyan Jin
Han Shi
Minglong Shao
Meng Song
Xi Su

BACKGROUND AND HYPOTHESIS: Schizophrenia (SZ) patients display significant structural brain abnormalities; nevertheless, the genetic mechanisms regulating cortical anatomical variations and their correlation with the disease phenotype are still ambiguous. STUDY DESIGN: We characterized anatomical variation using a surface-based method derived from structural magnetic resonance imaging of patients with SZ and age- and sex-matched healthy controls (HCs). Partial least-squares regression was performed across cortex regions between anatomical variation and average transcriptional profiles of SZ risk genes and all qualified genes from the Allen Human Brain Atlas. The morphological features of each brain region were correlated to symptomology variables in patients with SZ using partial correlation analysis. STUDY RESULTS: A total of 203 SZ and 201 HCs were included in the final analysis. We observed significant variation of 55 regions of cortical thickness, 23 regions of volume, 7 regions of area, and 55 regions of local gyrification index (LGI) between SZ and HC groups. Expression profiles of 4 SZ risk genes and 96 genes from all qualified genes showed a correlation to anatomical variability, however, after multiple comparisons, the correlations were no longer significant. LGI variability in multiple frontal subregions was associated with specific symptoms of SZ, whereas cognitive function involving attention/vigilance was linked to LGI variability across nine brain regions. CONCLUSIONS: Cortical anatomical variation of patients with schizophrenia is associated with gene transcriptome profiles as well as clinical phenotypes.

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YNICL Journal 2022 Journal Article

Abnormal patterns of regional homogeneity and functional connectivity across the adolescent first-episode, adult first-episode and adult chronic schizophrenia

Yongfeng Yang
Yuqing Sun
Yuliang Zhang
Xueyan Jin
Zheng Li
Minli Ding
Han Shi
Qing Liu

Functional deficits in schizophrenia (SZ) are observed prior to the onset of psychosis and differ at different stages of SZ. However, there is a paucity of studies focused on adolescent first-episode SZ (AOS), adult first-episode SZ (AFES), and adult chronic SZ (CHSZ). In this study, we investigated regional activity and corresponding functional connectivity alterations that have aimed to compare the three disease stages simultaneously. The subjects comprised 49 patients with AOS, 57 patients with AFES, 51 patients with CHSZ, 41 adolescent healthy controls, and 138 adult healthy controls. We compared regional homogeneity (ReHo) between patients at each disease stage with matched healthy controls. We focused on the shared brain regions that showed significant differences between SZ patients at the three different disease stages and healthy controls. Further analysis was conducted to explore whether the patterns of the whole brain functional connectivity alterations were similar. The putamen and medial frontal gyrus (MFG) showed consistently abnormal patterns in AOS, AFES, and CHSZ. Commonly decreased ReHo values in the MFG and increased ReHo values in the bilateral putamen were found in AOS, AFES, and CHSZ. Functional connectivity of MFG remained common abnormality in different SZ stage. In conclusion, ReHo abnormalities in the MFG and the putamen may be common abnormal patterns of brain function in the three different stages of SZ. The vmPFC-dlPFC FC abnormality common occurs in adolescence and adulthood.. This study may provide a more comprehensive understanding of the neurodevelopmental abnormality across the AOS, AFES, and CHSZ.

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JBHI Journal 2021 Journal Article

Learning a Deep CNN Denoising Approach Using Anatomical Prior Information Implemented With Attention Mechanism for Low-Dose CT Imaging on Clinical Patient Data From Multiple Anatomical Sites

Zhenxing Huang
Xinfeng Liu
Rongpin Wang
Zixiang Chen
Yongfeng Yang
Xin Liu
Hairong Zheng
Dong Liang

Dose reduction in computed tomography (CT) has gained considerable attention in clinical applications because it decreases radiation risks. However, a lower dose generates noise in low-dose computed tomography (LDCT) images. Previous deep learning (DL)-based works have investigated ways to improve diagnostic performance to address this ill-posed problem. However, most of them disregard the anatomical differences among different human body sites in constructing the mapping function between LDCT images and their high-resolution normal-dose CT (NDCT) counterparts. In this article, we propose a novel deep convolutional neural network (CNN) denoising approach by introducing information of the anatomical prior. Instead of designing multiple networks for each independent human body anatomical site, a unified network framework is employed to process anatomical information. The anatomical prior is represented as a pattern of weights of the features extracted from the corresponding LDCT image in an anatomical prior fusion module. To promote diversity in the contextual information, a spatial attention fusion mechanism is introduced to capture many local regions of interest in the attention fusion module. Although many network parameters are saved, the experimental results demonstrate that our method, which incorporates anatomical prior information, is effective in denoising LDCT images. Furthermore, the anatomical prior fusion module could be conveniently integrated into other DL-based methods and avails the performance improvement on multiple anatomical data.

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YNICL Journal 2021 Journal Article

Multisite schizophrenia classification by integrating structural magnetic resonance imaging data with polygenic risk score

Ke Hu
Meng Wang
Yong Liu
Hao Yan
Ming Song
Jun Chen
Yunchun Chen
Huaning Wang

Previous brain structural magnetic resonance imaging studies reported that patients with schizophrenia have brain structural abnormalities, which have been used to discriminate schizophrenia patients from normal controls. However, most existing studies identified schizophrenia patients at a single site, and the genetic features closely associated with highly heritable schizophrenia were not considered. In this study, we performed standardized feature extraction on brain structural magnetic resonance images and on genetic data to separate schizophrenia patients from normal controls. A total of 1010 participants, 508 schizophrenia patients and 502 normal controls, were recruited from 8 independent sites across China. Classification experiments were carried out using different machine learning methods and input features. We tested a support vector machine, logistic regression, and an ensemble learning strategy using 3 feature sets of interest: (1) imaging features: gray matter volume, (2) genetic features: polygenic risk scores, and (3) a fusion of imaging features and genetic features. The performance was assessed by leave-one-site-out cross-validation. Finally, some important brain and genetic features were identified. We found that the models with both imaging and genetic features as input performed better than models with either alone. The average accuracy of the classification models with the best performance in the cross-validation was 71.6%. The genetic feature that measured the cumulative risk of the genetic variants most associated with schizophrenia contributed the most to the classification. Our work took the first step toward considering both structural brain alterations and genome-wide genetic factors in a large-scale multisite schizophrenia classification. Our findings may provide insight into the underlying pathophysiology and risk mechanisms of schizophrenia.

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