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Yigit Efe Erginbas

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4 papers

2 author rows

NeurIPS Conference 2025 Conference Paper

ProxySPEX: Inference-Efficient Interpretability via Sparse Feature Interactions in LLMs

Landon Butler
Abhineet Agarwal
Justin Kang
Yigit Efe Erginbas
Bin Yu
Kannan Ramchandran

Large Language Models (LLMs) have achieved remarkable performance by capturing complex interactions between input features. To identify these interactions, most existing approaches require enumerating all possible combinations of features up to a given order, causing them to scale poorly with the number of inputs $n$. Recently, Kang et al. (2025) proposed SPEX, an information-theoretic approach that uses interaction sparsity to scale to $n \approx 10^3$ features. SPEX greatly improves upon prior methods but requires tens of thousands of model inferences, which can be prohibitive for large models. In this paper, we observe that LLM feature interactions are often *hierarchical*—higher-order interactions are accompanied by their lower-order subsets—which enables more efficient discovery. To exploit this hierarchy, we propose ProxySPEX, an interaction attribution algorithm that first fits gradient boosted trees to masked LLM outputs and then extracts the important interactions. Experiments across four challenging high-dimensional datasets show that ProxySPEX more faithfully reconstructs LLM outputs by 20\% over marginal attribution approaches while using *$10\times$ fewer inferences* than SPEX. By accounting for interactions, ProxySPEX efficiently identifies the most influential features, providing a scalable approximation of their Shapley values. Further, we apply ProxySPEX to two interpretability tasks. *Data attribution*, where we identify interactions among CIFAR-10 training samples that influence test predictions, and *mechanistic interpretability*, where we uncover interactions between attention heads, both within and across layers, on a question-answering task. The ProxySPEX algorithm is available at.

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NeurIPS Conference 2025 Conference Paper

SHAP zero Explains Biological Sequence Models with Near-zero Marginal Cost for Future Queries

Darin Tsui
Aryan Musharaf
Yigit Efe Erginbas
Justin Kang
Amirali Aghazadeh

The growing adoption of machine learning models for biological sequences has intensified the need for interpretable predictions, with Shapley values emerging as a theoretically grounded standard for model explanation. While effective for local explanations of individual input sequences, scaling Shapley-based interpretability to extract global biological insights requires evaluating thousands of sequences—incurring exponential computational cost per query. We introduce SHAP zero, a novel algorithm that amortizes the cost of Shapley value computation across large-scale biological datasets. After a one-time model sketching step, SHAP zero enables near-zero marginal cost for future queries by uncovering an underexplored connection between Shapley values, high-order feature interactions, and the sparse Fourier transform of the model. Applied to models of guide RNA efficacy, DNA repair outcomes, and protein fitness, SHAP zero explains predictions orders of magnitude faster than existing methods, recovering rich combinatorial interactions previously inaccessible at scale. This work opens the door to principled, efficient, and scalable interpretability for black-box sequence models in biology.

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ICML Conference 2025 Conference Paper

SPEX: Scaling Feature Interaction Explanations for LLMs

Justin Singh Kang
Landon Butler
Abhineet Agarwal
Yigit Efe Erginbas
Ramtin Pedarsani
Bin Yu 0001
Kannan Ramchandran

Large language models (LLMs) have revolutionized machine learning due to their ability to capture complex interactions between input features. Popular post-hoc explanation methods like SHAP provide marginal feature attributions, while their extensions to interaction importances only scale to small input lengths ($\approx 20$). We propose Spectral Explainer (SPEX), a model-agnostic interaction attribution algorithm that efficiently scales to large input lengths ($\approx 1000)$. SPEX exploits underlying natural sparsity among interactions—common in real-world data—and applies a sparse Fourier transform using a channel decoding algorithm to efficiently identify important interactions. We perform experiments across three difficult long-context datasets that require LLMs to utilize interactions between inputs to complete the task. For large inputs, SPEX outperforms marginal attribution methods by up to 20% in terms of faithfully reconstructing LLM outputs. Further, SPEX successfully identifies key features and interactions that strongly influence model output. For one of our datasets, HotpotQA, SPEX provides interactions that align with human annotations. Finally, we use our model-agnostic approach to generate explanations to demonstrate abstract reasoning in closed-source LLMs ( GPT-4o mini ) and compositional reasoning in vision-language models.

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NeurIPS Conference 2023 Conference Paper

Online Pricing for Multi-User Multi-Item Markets

Yigit Efe Erginbas
Thomas Courtade
Kannan Ramchandran
Soham Phade

Online pricing has been the focus of extensive research in recent years, particularly in the context of selling an item to sequentially arriving users. However, what if a provider wants to maximize revenue by selling multiple items to multiple users in each round? This presents a complex problem, as the provider must intelligently offer the items to those users who value them the most without exceeding their highest acceptable prices. In this study, we tackle this challenge by designing online algorithms that can efficiently offer and price items while learning user valuations from accept/reject feedback. We focus on three user valuation models (fixed valuations, random experiences, and random valuations) and provide algorithms with nearly-optimal revenue regret guarantees. In particular, for any market setting with $N$ users, $M$ items, and load $L$ (which roughly corresponds to the maximum number of simultaneous allocations possible), our algorithms achieve regret of order $O(NM\log\log(LT))$ under fixed valuations model, $\widetilde{O}(\sqrt{NMLT})$ under random experiences model and $\widetilde{O}(\sqrt{NMLT})$ under random valuations model in $T$ rounds.

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