EAAI Journal 2026 Journal Article
A multispectral feature framework for predicting soybean high temperature resistance grades based on masked autoencoding and supervised contrastive learning with dual-branch pretraining
- Youhui Deng
- Weizhi Yang
- Haoran Chen
- Xiaodan Zhang
- Jiajia Li
- Xiaobo Wang
- Xiu Jin
Global climate change has led to increasingly frequent heat stress, posing a serious threat to soybean yield and quality. Accurately evaluating soybean heat resistance is of great significance for enhancing crop adaptability and advancing stress-resilient breeding. However, conventional deep learning approaches for field crop phenotyping are often constrained by data scarcity and the difficulty of labeling, underscoring the need for more effective modeling strategies. To address this challenge, we propose the soybean multispectral self-supervised fusion framework (SoyMSF), a dual-branch learning architecture that integrates masked autoencoding (MAE) and supervised contrastive learning (SCL) to predict soybean high-temperature resistance grades. The multispectral image data in this study were all derived from the samples of the high-temperature stress (HT) group and the control (CK) group of soybeans in the experimental field. In the framework, the MAE module performs structure-aware unsupervised pretraining to extract latent spatial features from multispectral images, while the SCL module constructs contrastive tasks using HT and CK labels to strengthen class-discriminative feature representation. Experimental results demonstrate that SoyMSF achieves a prediction accuracy of 86. 61 % and an F1-score of 85. 49 % on the test set, significantly outperforming any single-model baseline. These findings highlight the importance of combining label strategies with feature fusion in contrastive learning, and demonstrate the potential of SoyMSF for high-throughput phenotyping and stress-resilient breeding. Overall, SoyMSF not only supports high-throughput phenotyping and stress-resilient breeding in soybeans, but also provides a generalizable paradigm for self-supervised multispectral modeling with potential applications in broader agricultural image analysis tasks.