Author name cluster

Wei Ju

Possible papers associated with this exact author name in Arrow. This page groups case-insensitive exact name matches and is not a full identity disambiguation profile.

20 papers

1 author row

AAAI Conference 2026 Conference Paper

CogniTrust: Cognitive Memory-Driven Verifiable Supervision for Robust Hashing

Yiyang Gu
Bohan Wu
Yifang Qin
Jiaru Tang
Rong-Cheng Tu
Zhiping Xiao
Taian Guo
Junyu Luo

In this paper, we study the problem of robust multi-label hashing, where label noise hinders the learning of a reliable semantic structure from data. Many existing methods rely on heuristic sample selection or consistency-based training, but lack a unified mechanism to validate and refine supervision across structural and semantic levels. Inspired by cognitive theories of human memory, we propose a novel framework called CogniTrust that unifies verifiable supervision with a triadic memory model: a) In episodic memory, feature activations are decomposed into spatial patterns that support the assessment of structural evidence and the estimation of label reliability; b) Semantic memory keeps track of class-level prototypes from structurally attentive regions to estimate the semantic plausibility of labels; c) Reconstructive memory simulates memory recall through interpolation between images using a diffusion-based mixup process, which enriches the training signals for semantically uncertain regions. These components work together, allowing supervision to be refined through the joint consideration of spatial structure and semantic information. Extensive experiments on noisy hashing benchmarks demonstrate that CogniTrust consistently outperforms a range of state-of-the-art baselines. Our results show that cognitive memory mechanisms offer a principled basis for more reliable label denoising and robust hashing.

PDF Details DOI

AAAI Conference 2026 Conference Paper

Evidence-aware Integration and Domain Identification of Spatial Transcriptomics Data

Wei Zhang
Siyu Yi
Lezhi Chen
Yifan Wang
Ziyue Qiao
Yongdao Zhou
Wei Ju

Spatial transcriptomics (ST) enables joint profiling of gene expression and spatial positions, thereby revealing spatially resolved biological functions. However, many existing ST analysis methods often fail to explicitly quantify the belief and uncertainty in decisions caused by noisy ST data, making it difficult to handle spots of varying quality in a fine-grained manner. In addition, domain identification is a fundamental and critical task in ST, but commonly used models that separate expression learning and clustering often struggle to learn cluster-friendly latent representations effectively. To address these issues, we propose PREST, a prototype-based evidence-aware integration framework for ST data. PREST performs multi-scale representation learning with fine-grained attention fusion and introduces learnable class prototypes to quantify belief and uncertainty in model decisions. We aim to align overall belief scores with latent semantic information to enhance uncertainty quantification and prototype learning, thereby promoting the learning of clustering-friendly representations. PREST further integrates an uncertainty-aware reconstruction module and spatial regularization to reduce overfitting to unreliable spots and promote denoised, discriminative representations. Extensive experiments on several benchmark datasets validate the effectiveness and superiority of our proposed PREST across various downstream tasks.

PDF Details DOI

AAAI Conference 2026 Conference Paper

FairGC: Fostering Individual and Group Fairness for Deep Graph Clustering

Haodong Zhang
Xinyue Wang
Tao Ren
Yifan Wang
Siyu Yi
Fanchun Meng
Zeyu Ma
Qingqing Long

The widespread adoption of graph neural networks (GNNs) has brought increased attention to fairness issues related to sensitive attributes, such as gender and race, in practical scenarios. However, this concern remains largely unexplored in the context of graph clustering. Conventional fair graph clustering methods primarily depend on spectral clustering approaches. Meanwhile, we argue that existing graph learning works mainly focus on a single type of fairness, whereas graph clustering should achieve group equality-informed individual fairness. In this paper, we introduce for the first time a fairness-aware framework termed FairGC for deep graph clustering, which integrates the dual objectives of individual and group fairness while maintaining accurate clustering results. Specifically, we construct two views with distinct semantics using Siamese encoders. Then, we apply multi-step random walks on view-specific affinity graphs to capture high-order affinities of node pairs, thereby reformulating the contrastive learning with a focus on individual similarity. Besides, we utilize adversarial learning by making node representations independent of the estimated sensitive attributes to further eliminate group biases of clustering results. Extensive experiments on four benchmarks demonstrate the effectiveness and superiority of our proposed framework FairGC.

PDF Details DOI

AAAI Conference 2025 Conference Paper

Cluster-guided Contrastive Class-imbalanced Graph Classification

Wei Ju
Zhengyang Mao
Siyu Yi
Yifang Qin
Yiyang Gu
Zhiping Xiao
Jianhao Shen
Ziyue Qiao

This paper studies the problem of class-imbalanced graph classification, which aims at effectively classifying the graph categories in scenarios with imbalanced class distributions. While graph neural networks (GNNs) have achieved remarkable success, their modeling ability on imbalanced graph-structured data remains suboptimal, which typically leads to predictions biased towards the majority classes. On the other hand, existing class-imbalanced learning methods in vision may overlook the rich graph semantic substructures of the majority classes and excessively emphasize learning from the minority classes. To address these challenges, we propose a simple yet powerful approach called C3GNN that integrates the idea of clustering into contrastive learning to enhance class-imbalanced graph classification. Technically, C3GNN clusters graphs from each majority class into multiple subclasses, with sizes comparable to the minority class, mitigating class imbalance. It also employs the Mixup technique to generate synthetic samples, enriching the semantic diversity of each subclass. Furthermore, supervised contrastive learning is used to hierarchically learn effective graph representations, enabling the model to thoroughly explore semantic substructures in majority classes while avoiding excessive focus on minority classes. Extensive experiments on real-world graph benchmark datasets verify the superior performance of our proposed method against competitive baselines.

PDF Details DOI

AAAI Conference 2025 Conference Paper

DisCo: Graph-Based Disentangled Contrastive Learning for Cold-Start Cross-Domain Recommendation

Hourun Li
Yifan Wang
Zhiping Xiao
Jia Yang
Changling Zhou
Ming Zhang
Wei Ju

Recommender systems are widely used in various real-world applications, but they often encounter the persistent challenge of the user cold-start problem. Cross-domain recommendation (CDR), which leverages user interactions from one domain to improve prediction performance in another, has emerged as a promising solution. However, users with similar preferences in the source domain may exhibit different interests in the target domain. Therefore, directly transferring embeddings may introduce irrelevant source-domain collaborative information. In this paper, we propose a novel graph-based disentangled contrastive learning framework to capture fine-grained user intent and filter out irrelevant collaborative information, thereby avoiding negative transfer. Specifically, for each domain, we use a multi-channel graph encoder to capture diverse user intents. We then construct the affinity graph in the embedding space and perform multi-step random walks to capture high-order user similarity relationships. Treating one domain as the target, we propose a disentangled intent-wise contrastive learning approach, guided by user similarity, to refine the bridging of user intents across domains.Extensive experiments on four benchmark CDR datasets demonstrate that DisCo consistently outperforms existing state-of-the-art baselines, thereby validating the effectiveness of both DisCo and its components.

PDF Details DOI

NeurIPS Conference 2025 Conference Paper

Dual Prototype-Enhanced Contrastive Framework for Class-Imbalanced Graph Domain Adaptation

Xin Ma
Yifan Wang
Siyu Yi
Wei Ju
Junyu Luo
Yusheng Zhao
Xiao Luo
Jiancheng Lv

Graph transfer learning, especially in unsupervised domain adaptation, aims to transfer knowledge from a label-abundant source graph to an unlabeled target graph. However, most existing approaches overlook the common issue of label imbalance in the source domain, typically assuming a balanced label distribution that rarely holds in practice. Moreover, they face challenges arising from biased knowledge in the source graph and substantial domain distribution shifts. To remedy the above challenges, we propose a dual-branch prototype-enhanced contrastive framework for class-imbalanced graph domain adaptation in this paper. Specifically, we introduce a dual-branch graph encoder to capture both local and global information, generating class-specific prototypes from a distilled anchor set. Then, a prototype-enhanced contrastive learning framework is introduced. On the one hand, we encourage class alignment between the two branches based on constructed prototypes to alleviate the bias introduced by class imbalance. On the other hand, we infer the pseudo-labels for the target domain and align sample pairs across domains that share similar semantics to reduce domain discrepancies. Experimental results show that our ImGDA outperforms the state-of-the-art methods across multiple datasets and settings. The code is available at: https: //github. com/maxin88scu/ImGDA.

PDF Details

NeurIPS Conference 2025 Conference Paper

Dynamic Bundling with Large Language Models for Zero-Shot Inference on Text-Attributed Graphs

Yusheng Zhao
Qixin Zhang
Xiao Luo
Weizhi Zhang
Zhiping Xiao
Wei Ju
Philip S Yu
Ming Zhang

Large language models (LLMs) have been used in many zero-shot learning problems, with their strong generalization ability. Recently, adopting LLMs in text-attributed graphs (TAGs) has drawn increasing attention. However, the adoption of LLMs faces two major challenges: limited information on graph structure and unreliable responses. LLMs struggle with text attributes isolated from the graph topology. Worse still, they yield unreliable predictions due to both information insufficiency and the inherent weakness of LLMs (e. g. , hallucination). Towards this end, this paper proposes a novel method named Dynamic Text Bundling Supervision (DENSE) that queries LLMs with bundles of texts to obtain bundle-level labels and uses these labels to supervise graph neural networks. Specifically, we sample a set of bundles, each containing a set of nodes with corresponding texts of close proximity. We then query LLMs with the bundled texts to obtain the label of each bundle. Subsequently, the bundle labels are used to supervise the optimization of graph neural networks, and the bundles are further refined to exclude noisy items. To justify our design, we also provide theoretical analysis of the proposed method. Extensive experiments across ten datasets validate the effectiveness of the proposed method.

PDF Details

AIJ Journal 2025 Journal Article

MATE: Masked optimal transport with dynamic selection for partial label graph learning

Yiyang Gu
Binqi Chen
Zihao Chen
Ziyue Qiao
Xiao Luo
Junyu Luo
Zhiping Xiao
Wei Ju

This paper investigates the problem of partial label graph learning, in which every graph is associated with a set of candidate labels. Previous methods for weakly supervised graph classification often provide pseudo-labels for graph samples that could be overconfident and biased towards the dominant classes, thus resulting in substantial error accumulation. In this paper, we introduce a new framework named Masked Optimal Transport with Dynamic Selection (MATE) for partial label graph learning, which improves the quality of graph assignments from the perspectives of class balancing and uncertainty mining. In particular, our MATE masks probabilities out of candidate sets and then adopts optimal transport to optimize the assignments without class biases. This design is based on the assumption that the true label distribution is class-balanced or nearly balanced, which is common in various training datasets and real-world scenarios. To further reduce potential noise, we propose a novel scoring metric termed partial energy discrepancy (PED) to evaluate the uncertainty of assignments, and then introduce a dynamic selection strategy that modifies the sample-specific thresholds via momentum updating. Finally, these samples are divided into three levels, i. e. , confident, less-confident, and unconfident and each group is trained separately in our collaborative optimization framework. Extensive experiments on various benchmarks demonstrate the superiority of our MATE compared to various state-of-the-art baselines.

Details DOI

IJCAI Conference 2025 Conference Paper

PALA: Class-imbalanced Graph Domain Adaptation via Prototype-anchored Learning and Alignment

Xin Ma
Yifan Wang
Siyu Yi
Wei Ju
Bei Wu
Ziyue Qiao
Chenwei Tang
Jiancheng Lv

Graph domain adaptation is a key subfield of graph transfer learning that aims to bridge domain gaps by transferring knowledge from a label-rich source graph to an unlabeled target graph. However, most existing methods assume balanced labels in the source graph, which often fails in practice and leads to biased knowledge transfer. To address this, in this paper, we propose a prototype-anchored learning and alignment framework for class-imbalanced graph domain adaptation. Specifically, we incorporate pointwise node mutual information into the graph encoder to capture high-order topological proximity and learn generalized node representations. Leveraging this, we then introduce categorical prototypes with adversarial proto-instances for prototype-anchored learning and recalibration to represent the source graph under an imbalanced class distribution. Finally, we introduce a weighted prototype contrastive adaptation strategy that aligns target pseudo-labels with source prototypes to handle class imbalance during adaptation. Extensive experiments show that our PALA outperforms the state-of-the-art methods. Our code is available at https: //github. com/maxin88scu/PALA.

PDF Details DOI

NeurIPS Conference 2025 Conference Paper

SEGA: Shaping Semantic Geometry for Robust Hashing under Noisy Supervision

Yiyang Gu
Bohan Wu
Qinghua Ran
Rong-Cheng Tu
Xiao Luo
Zhiping Xiao
Wei Ju
Dacheng Tao

This paper studies the problem of learning hash codes from noisy supervision, which is a practical yet challenging task. This problem is important in extensive real-world applications such as image retrieval and cross-modal retrieval. However, most of the existing methods focus on label denoising to address this problem, but ignore the geometric structure of the hash space, which is critical for learning stable hash codes. Towards this end, this paper proposes a novel framework named Semantic Geometry Shaping (SEGA) that explicitly refines the semantic geometry of hash space. Specifically, we first learn dynamic class prototypes as semantic anchors and cluster hash embeddings around these prototypes to keep structural stability. We then leverage both the energy of predicted distributions and structure-based divergence to estimate the uncertainty of instances and calibrate the supervision in a soft manner. Moreover, we introduce structure-aware interpolation to improve the class boundaries. To verify the effectiveness of our design, we give the theoretical analysis for the proposed framework. Experiments on a range of widely-used retrieval datasets justify the superiority of our SEGA over extensive strong baselines under noisy supervision.

PDF Details

AAAI Conference 2025 Conference Paper

TRACI: A Data-centric Approach for Multi-Domain Generalization on Graphs

Yusheng Zhao
Changhu Wang
Xiao Luo
Junyu Luo
Wei Ju
Zhiping Xiao
Ming Zhang

Graph neural networks (GNNs) have gained superior performance in graph-based prediction tasks with a variety of applications such as social analysis and drug discovery. Despite the remarkable progress, their performance often degrades on test graphs with distribution shifts. Existing domain adaptation methods rely on unlabeled test graphs during optimization, limiting their applicability to graphs in the wild. Towards this end, this paper studies the problem of multi-domain generalization on graphs, which utilizes multiple source graphs to learn a GNN with high performance on unseen target graphs. We propose a new approach named Topological Adversarial Learning with Prototypical Mixup (TRACI) to solve the problem. The fundamental principle behind our TRACI is to produce virtual adversarial and mixed graph samples from a data-centric view. In particular, TRACI enhances GNN generalization by employing a gradient-ascent strategy that considers both label prediction entropy and graph topology to craft challenging adversarial samples. Additionally, it generates domain-agnostic node representations by characterizing class-graph pair prototypes through latent distributions and applying multi-sample prototypical Mixup for distribution alignment across graphs. We further provide theoretical analysis showing that TRACI reduces the model's excess risk. Extensive experiments on various benchmark datasets demonstrate that TRACI outperforms state-of-the-art baselines, validating its effectiveness.

PDF Details DOI

IJCAI Conference 2024 Conference Paper

A Survey of Data-Efficient Graph Learning

Wei Ju
Siyu Yi
Yifan Wang
Qingqing Long
Junyu Luo
Zhiping Xiao
Ming Zhang

Graph-structured data, prevalent in domains ranging from social networks to biochemical analysis, serve as the foundation for diverse real-world systems. While graph neural networks demonstrate proficiency in modeling this type of data, their success is often reliant on significant amounts of labeled data, posing a challenge in practical scenarios with limited annotation resources. To tackle this problem, tremendous efforts have been devoted to enhancing graph machine learning performance under low-resource settings by exploring various approaches to minimal supervision. In this paper, we introduce a novel concept of Data-Efficient Graph Learning (DEGL) as a research frontier, and present the first survey that summarizes the current progress of DEGL. We initiate by highlighting the challenges inherent in training models with large labeled data, paving the way for our exploration into DEGL. Next, we systematically review recent advances on this topic from several key aspects, including self-supervised graph learning, semi-supervised graph learning, and few-shot graph learning. Also, we state promising directions for future research, contributing to the evolution of graph machine learning.

PDF Details DOI

NeurIPS Conference 2024 Conference Paper

EGODE: An Event-attended Graph ODE Framework for Modeling Rigid Dynamics

Jingyang Yuan
Gongbo Sun
Zhiping Xiao
Hang Zhou
Xiao Luo
Junyu Luo
Yusheng Zhao
Wei Ju

This paper studies the problem of rigid dynamics modeling, which has a wide range of applications in robotics, graphics, and mechanical design. The problem is partly solved by graph neural network (GNN) simulators. However, these approaches cannot effectively handle the relationship between intrinsic continuity and instantaneous changes in rigid dynamics. Moreover, they usually neglect hierarchical structures across mesh nodes and objects in systems. In this paper, we propose a novel approach named Event-attend Graph ODE (EGODE) for effective rigid dynamics modeling. In particular, we describe the rigid system using both mesh node representations and object representations. To model continuous dynamics across hierarchical structures, we use a coupled graph ODE framework for the evolution of both types of representations over a long period. In addition, to capture instantaneous changes during the collision, we introduce an event module, which can effectively estimate the occurrence of the collision and update the states of both mesh node and object representations during evolution. Extensive experiments on a range of benchmark datasets validate the superiority of the proposed EGODE compared to various state-of-the-art baselines. The source code can be found at https: //github. com/yuanjypku/EGODE.

PDF Details DOI

IJCAI Conference 2024 Conference Paper

Rank and Align: Towards Effective Source-free Graph Domain Adaptation

Junyu Luo
Zhiping Xiao
Yifan Wang
Xiao Luo
Jingyang Yuan
Wei Ju
Langechuan Liu
Ming Zhang

Graph neural networks (GNNs) have achieved impressive performance in graph domain adaptation. However, extensive source graphs could be unavailable in real-world scenarios due to privacy and storage concerns. To this end, we investigate an underexplored yet practical problem of source-free graph domain adaptation, which transfers knowledge from source models instead of source graphs to a target domain. To solve this problem, we introduce a novel GNN-based approach called Rank and Align (RNA), which ranks graph similarities with spectral seriation for robust semantics learning, and aligns inharmonic graphs with harmonic graphs which close to the source domain for subgraph extraction. In particular, to overcome label scarcity, we employ the spectral seriation algorithm to infer the robust pairwise rankings, which can guide semantic learning using a similarity learning objective. To depict distribution shifts, we utilize spectral clustering and the silhouette coefficient to detect harmonic graphs, which the source model can easily classify. To reduce potential domain discrepancy, we extract domain-invariant subgraphs from inharmonic graphs by an adversarial edge sampling process, which guides the invariant learning of GNNs. Extensive experiments on several benchmark datasets demonstrate the effectiveness of our proposed RNA.

PDF Details DOI

AAAI Conference 2023 Conference Paper

GLCC: A General Framework for Graph-Level Clustering

Wei Ju
Yiyang Gu
Binqi Chen
Gongbo Sun
Yifang Qin
Xingyuming Liu
Xiao Luo
Ming Zhang

This paper studies the problem of graph-level clustering, which is a novel yet challenging task. This problem is critical in a variety of real-world applications such as protein clustering and genome analysis in bioinformatics. Recent years have witnessed the success of deep clustering coupled with graph neural networks (GNNs). However, existing methods focus on clustering among nodes given a single graph, while exploring clustering on multiple graphs is still under-explored. In this paper, we propose a general graph-level clustering framework named Graph-Level Contrastive Clustering (GLCC) given multiple graphs. Specifically, GLCC first constructs an adaptive affinity graph to explore instance- and cluster-level contrastive learning (CL). Instance-level CL leverages graph Laplacian based contrastive loss to learn clustering-friendly representations while cluster-level CL captures discriminative cluster representations incorporating neighbor information of each sample. Moreover, we utilize neighbor-aware pseudo-labels to reward the optimization of representation learning. The two steps can be alternatively trained to collaborate and benefit each other. Experiments on a range of well-known datasets demonstrate the superiority of our proposed GLCC over competitive baselines.

PDF Details DOI

TMLR Journal 2023 Journal Article

RIGNN: A Rationale Perspective for Semi-supervised Open-world Graph Classification

Xiao Luo
Yusheng Zhao
Zhengyang Mao
Yifang Qin
Wei Ju
Ming Zhang
Yizhou Sun

Graph classification has gained growing attention in the graph machine learning community and a variety of semi-supervised methods have been developed to reduce the high cost of annotation. They usually combine graph neural networks (GNNs) and extensive semi-supervised techniques such as knowledge distillation. However, they adhere to the close-set assumption that unlabeled graphs all belong to known classes, limiting their applications in the real world. This paper goes further, investigating a practical problem of semi-supervised open-world graph classification where these unlabeled graph data could come from unseen classes. A novel approach named Rationale-Informed GNN (RIGNN) is proposed, which takes a rationale view to detect components containing the most information related to the label space and classify unlabeled graphs into a known class or an unseen class. In particular, RIGNN contains a relational detector and a feature extractor to produce effective rationale features, which maximize the mutual information with label information and exhibit sufficient disentanglement with non-rationale elements. Furthermore, we construct a graph-of-graph based on geometrical relationships, which gives instructions on enhancing rationale representations. In virtue of effective rationale representations, we can provide accurate and balanced predictions for unlabeled graphs. An extension is also made to accomplish effective open-set graph classification. We verify our proposed methods on four benchmark datasets in various settings and experimental results reveal the effectiveness of our proposed RIGNN compared with state-of-the-art methods.

PDF Details

TMLR Journal 2023 Journal Article

Zero-shot Node Classification with Graph Contrastive Embedding Network

Wei Ju
Yifang Qin
Siyu Yi
Zhengyang Mao
Kangjie Zheng
Luchen Liu
Xiao Luo
Ming Zhang

This paper studies zero-shot node classification, which aims to predict new classes (i.e., unseen classes) of nodes in a graph. This problem is challenging yet promising in a variety of real-world applications such as social analysis and bioinformatics. The key of zero-shot node classification is to enable the knowledge transfer of nodes from training classes to unseen classes. However, existing methods typically ignore the dependencies between nodes and classes, and fail to be organically integrated in a united way. In this paper, we present a novel framework called the Graph Contrastive Embedding Network (GraphCEN) for zero-shot node classification. Specifically, GraphCEN first constructs an affinity graph to model the relations between the classes. Then the node- and class-level contrastive learning (CL) are proposed to jointly learn node embeddings and class assignments in an end-to-end manner. The two-level CL can be optimized to mutually enhance each other. Extensive experiments indicate that our GraphCEN significantly outperforms the state-of-the-art approaches on multiple challenging benchmark datasets.

PDF Details

AAAI Conference 2022 Conference Paper

DisenCite: Graph-Based Disentangled Representation Learning for Context-Specific Citation Generation

Yifan Wang
Yiping Song
Shuai Li
Chaoran Cheng
Wei Ju
Ming Zhang
Sheng Wang

Citing and describing related literature are crucial to scientific writing. Many existing approaches show encouraging performance in citation recommendation, but are unable to accomplish the more challenging and onerous task of citation text generation. In this paper, we propose a novel disentangled representation based model DisenCite to automatically generate the citation text through integrating paper text and citation graph. A key novelty of our method compared with existing approaches is to generate context-specific citation text, empowering the generation of different types of citations for the same paper. In particular, we first build and make available a graph enhanced contextual citation dataset (GCite) with 25K edges in different types characterized by citation contained sections over 4. 8K research papers. Based on this dataset, we encode each paper according to both textual contexts and structure information in the heterogeneous citation graph. The resulted paper representations are then disentangled by the mutual information regularization between this paper and its neighbors in graph. Extensive experiments demonstrate the superior performance of our method comparing to state-of-the-art approaches. We further conduct ablation and case studies to reassure that the improvement of our method comes from generating the context-specific citation through incorporating the citation graph.

PDF Details

IJCAI Conference 2022 Conference Paper

TGNN: A Joint Semi-supervised Framework for Graph-level Classification

Wei Ju
Xiao Luo
Meng Qu
Yifan Wang
Chong Chen
Minghua Deng
Xian-Sheng Hua
Ming Zhang

This paper studies semi-supervised graph classification, a crucial task with a wide range of applications in social network analysis and bioinformatics. Recent works typically adopt graph neural networks to learn graph-level representations for classification, failing to explicitly leverage features derived from graph topology (e. g. , paths). Moreover, when labeled data is scarce, these methods are far from satisfactory due to their insufficient topology exploration of unlabeled data. We address the challenge by proposing a novel semi-supervised framework called Twin Graph Neural Network (TGNN). To explore graph structural information from complementary views, our TGNN has a message passing module and a graph kernel module. To fully utilize unlabeled data, for each module, we calculate the similarity of each unlabeled graph to other labeled graphs in the memory bank and our consistency loss encourages consistency between two similarity distributions in different embedding spaces. The two twin modules collaborate with each other by exchanging instance similarity knowledge to fully explore the structure information of both labeled and unlabeled data. We evaluate our TGNN on various public datasets and show that it achieves strong performance.

PDF Details DOI

JBHI Journal 2017 Journal Article

Single-Channel Sparse Non-Negative Blind Source Separation Method for Automatic 3-D Delineation of Lung Tumor in PET Images

Ivica Kopriva
Wei Ju
Bin Zhang
Fei Shi
Dehui Xiang
Kai Yu
Ximing Wang
Ulas Bagci

In this paper, we propose a novel method for single-channel blind separation of nonoverlapped sources and, to the best of our knowledge, apply it for the first time to automatic segmentation of lung tumors in positron emission tomography (PET) images. Our approach first converts a 3-D PET image into a pseudo-multichannel image. Afterward, regularization free sparseness constrained non-negative matrix factorization is used to separate tumor from other tissues. By using complexity based criterion, we select tumor component as the one with minimal complexity. We have compared the proposed method with threshold based on 40% and 50% maximum standardized uptake value (SUV), graph cuts (GC), random walks (RW), and affinity propagation (AP) algorithms on 18 nonsmall cell lung cancer datasets with respect to ground truth (GT) provided by two radiologists. Dice similarity coefficient averaged with respect to two GTs is: 0. 78 ± 0. 12 by the proposed algorithm, 0. 78 ± 0. 1 by GC, 0. 77 ± 0. 13 by AP, 0. 77 ± 0. 07 by RW, and 0. 75 ± 0. 13 by 50% maximum SUV threshold. Since the proposed method achieved performance comparable with interactive methods, considering the unique challenges of lung tumor segmentation from PET images, our findings support possibility of using our fully automated method in routine clinics. The source codes will be available at www. mipav. net/English/research/research. html.

Details DOI