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Runzhao Yang

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5

AAAI Conference 2025 Conference Paper

A Compact Implicit Neural Representation for Efficient Storage of Massive 4D Functional Magnetic Resonance Imaging

  • Ruoran Li
  • Runzhao Yang
  • Wenxin Xiang
  • Yuxiao Cheng
  • Tingxiong Xiao
  • Lu Yang
  • Jinli Suo

Functional Magnetic Resonance Imaging (fMRI) data is a widely used kind of four-dimensional biomedical data, which requires effective compression. However, fMRI compressing poses unique challenges due to its intricate temporal dynamics, low signal-to-noise ratio, and complicated underlying redundancies. This paper reports a novel compression paradigm specifically tailored for fMRI data based on Implicit Neural Representation (INR). The proposed approach focuses on removing the various redundancies among the time series by employing several methods, including (i) conducting spatial correlation modeling for intra-region dynamics, (ii) decomposing reusable neuronal activation patterns, and (iii) using proper initialization together with nonlinear fusion to describe the inter-region similarity. This scheme appropriately incorporates the unique features of fMRI data, and experimental results on publicly available datasets demonstrate the effectiveness of the proposed method, surpassing state-of-the-art algorithms in both conventional image quality evaluation metrics and fMRI downstream tasks. This work in this paper paves the way for sharing massive fMRI data at low bandwidth and high fidelity.

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ICML Conference 2025 Conference Paper

DVI: A Derivative-based Vision Network for INR

  • Runzhao Yang
  • Xiaolong Wu
  • Zhihong Zhang 0004
  • Fabian Zhang
  • Tingxiong Xiao
  • Zongren Li
  • Kunlun He
  • Jinli Suo

Recent advancements in computer vision have seen Implicit Neural Representations (INR) becoming a dominant representation form for data due to their compactness and expressive power. To solve various vision tasks with INR data, vision networks can either be purely INR-based, but are thereby limited by simplistic operations and performance constraints, or include raster-based methods, which then tend to lose crucial structural information of the INR during the conversion process. To address these issues, we propose DVI, a novel Derivative-based Vision network for INR, capable of handling a variety of vision tasks across various data modalities, while achieving the best performance among the existing methods by incorporating state of the art raster-based methods into a INR based architecture. DVI excels by extracting semantic information from the high order derivative map of the INR, then seamlessly fusing it into a pre-existing raster-based vision network, enhancing its performance with deeper, task-relevant semantic insights. Extensive experiments on five vision tasks across three data modalities demonstrate DVI’s superiority over existing methods. Additionally, our study encompasses comprehensive ablation studies to affirm the efficacy of each element of DVI, the influence of different derivative computation techniques and the impact of derivative orders. Reproducible codes are provided in the supplementary materials.

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AAAI Conference 2024 Conference Paper

SHoP: A Deep Learning Framework for Solving High-Order Partial Differential Equations

  • Tingxiong Xiao
  • Runzhao Yang
  • Yuxiao Cheng
  • Jinli Suo

Solving partial differential equations (PDEs) has been a fundamental problem in computational science and of wide applications for both scientific and engineering research. Due to its universal approximation property, neural network is widely used to approximate the solutions of PDEs. However, existing works are incapable of solving high-order PDEs due to insufficient calculation accuracy of higher-order derivatives, and the final network is a black box without explicit explanation. To address these issues, we propose a deep learning framework to solve high-order PDEs, named SHoP. Specifically, we derive the high-order derivative rule for neural network, to get the derivatives quickly and accurately; moreover, we expand the network into a Taylor series, providing an explicit solution for the PDEs. We conduct experimental validations four high-order PDEs with different dimensions, showing that we can solve high-order PDEs efficiently and accurately. The source code can be found at https://github.com/HarryPotterXTX/SHoP.git.

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ICLR Conference 2023 Conference Paper

CUTS: Neural Causal Discovery from Irregular Time-Series Data

  • Yuxiao Cheng
  • Runzhao Yang
  • Tingxiong Xiao
  • Zongren Li
  • Jinli Suo
  • Kunlun He
  • Qionghai Dai

Causal discovery from time-series data has been a central task in machine learning. Recently, Granger causality inference is gaining momentum due to its good explainability and high compatibility with emerging deep neural networks. However, most existing methods assume structured input data and degenerate greatly when encountering data with randomly missing entries or non-uniform sampling frequencies, which hampers their applications in real scenarios. To address this issue, here we present CUTS, a neural Granger causal discovery algorithm to jointly impute unobserved data points and build causal graphs, via plugging in two mutually boosting modules in an iterative framework: (i) Latent data prediction stage: designs a Delayed Supervision Graph Neural Network (DSGNN) to hallucinate and register unstructured data which might be of high dimension and with complex distribution; (ii) Causal graph fitting stage: builds a causal adjacency matrix with imputed data under sparse penalty. Experiments show that CUTS effectively infers causal graphs from irregular time-series data, with significantly superior performance to existing methods. Our approach constitutes a promising step towards applying causal discovery to real applications with non-ideal observations.

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AAAI Conference 2023 Conference Paper

SCI: A Spectrum Concentrated Implicit Neural Compression for Biomedical Data

  • Runzhao Yang
  • Tingxiong Xiao
  • Yuxiao Cheng
  • Qianni Cao
  • Jinyuan Qu
  • Jinli Suo
  • Qionghai Dai

Massive collection and explosive growth of biomedical data, demands effective compression for efficient storage, transmission and sharing. Readily available visual data compression techniques have been studied extensively but tailored for natural images/videos, and thus show limited performance on biomedical data which are of different features and larger diversity. Emerging implicit neural representation (INR) is gaining momentum and demonstrates high promise for fitting diverse visual data in target-data-specific manner, but a general compression scheme covering diverse biomedical data is so far absent. To address this issue, we firstly derive a mathematical explanation for INR's spectrum concentration property and an analytical insight on the design of INR based compressor. Further, we propose a Spectrum Concentrated Implicit neural compression (SCI) which adaptively partitions the complex biomedical data into blocks matching INR's concentrated spectrum envelop, and design a funnel shaped neural network capable of representing each block with a small number of parameters. Based on this design, we conduct compression via optimization under given budget and allocate the available parameters with high representation accuracy. The experiments show SCI's superior performance to state-of-the-art methods including commercial compressors, data-driven ones, and INR based counterparts on diverse biomedical data. The source code can be found at https://github.com/RichealYoung/ImplicitNeuralCompression.git.

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v2026.09.13