Author name cluster

Robert Martin

Possible papers associated with this exact author name in Arrow. This page groups case-insensitive exact name matches and is not a full identity disambiguation profile.

2 papers

1 author row

NeurIPS Conference 2022 Conference Paper

BigBio: A Framework for Data-Centric Biomedical Natural Language Processing

Jason Fries
Leon Weber
Natasha Seelam
Gabriel Altay
Debajyoti Datta
Samuele Garda
Sunny Kang
Rosaline Su

Training and evaluating language models increasingly requires the construction of meta-datasets -- diverse collections of curated data with clear provenance. Natural language prompting has recently lead to improved zero-shot generalization by transforming existing, supervised datasets into a variety of novel instruction tuning tasks, highlighting the benefits of meta-dataset curation. While successful in general-domain text, translating these data-centric approaches to biomedical language modeling remains challenging, as labeled biomedical datasets are significantly underrepresented in popular data hubs. To address this challenge, we introduce BigBio a community library of 126+ biomedical NLP datasets, currently covering 13 task categories and 10+ languages. BigBio facilitates reproducible meta-dataset curation via programmatic access to datasets and their metadata, and is compatible with current platforms for prompt engineering and end-to-end few/zero shot language model evaluation. We discuss our process for task schema harmonization, data auditing, contribution guidelines, and outline two illustrative use cases: zero-shot evaluation of biomedical prompts and large-scale, multi-task learning. BigBio is an ongoing community effort and is available at https: //github. com/bigscience-workshop/biomedical

PDF Details

NeurIPS Conference 2008 Conference Paper

Dependence of Orientation Tuning on Recurrent Excitation and Inhibition in a Network Model of V1

Klaus Wimmer
Marcel Stimberg
Robert Martin
Lars Schwabe
Jorge Mariño
James Schummers
David Lyon
Mriganka Sur

One major role of primary visual cortex (V1) in vision is the encoding of the orientation of lines and contours. The role of the local recurrent network in these computations is, however, still a matter of debate. To address this issue, we analyze intracellular recording data of cat V1, which combine measuring the tuning of a range of neuronal properties with a precise localization of the recording sites in the orientation preference map. For the analysis, we consider a network model of Hodgkin-Huxley type neurons arranged according to a biologically plausible two-dimensional topographic orientation preference map. We then systematically vary the strength of the recurrent excitation and inhibition relative to the strength of the afferent input. Each parametrization gives rise to a different model instance for which the tuning of model neurons at different locations of the orientation map is compared to the experimentally measured orientation tuning of membrane potential, spike output, excitatory, and inhibitory conductances. A quantitative analysis shows that the data provides strong evidence for a network model in which the afferent input is dominated by strong, balanced contributions of recurrent excitation and inhibition. This recurrent regime is close to a regime of 'instability', where strong, self-sustained activity of the network occurs. The firing rate of neurons in the best-fitting network is particularly sensitive to small modulations of model parameters, which could be one of the functional benefits of a network operating in this particular regime.

PDF Details