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Peter Ramadge

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6 papers

1 author row

YNIMG Journal 2018 Journal Article

Mapping between fMRI responses to movies and their natural language annotations

Kiran Vodrahalli
Po-Hsuan Chen
Yingyu Liang
Christopher Baldassano
Janice Chen
Esther Yong
Christopher Honey
Uri Hasson

Several research groups have shown how to map fMRI responses to the meanings of presented stimuli. This paper presents new methods for doing so when only a natural language annotation is available as the description of the stimulus. We study fMRI data gathered from subjects watching an episode of BBCs Sherlock (Chen et al. , 2017), and learn bidirectional mappings between fMRI responses and natural language representations. By leveraging data from multiple subjects watching the same movie, we were able to perform scene classification with 72% accuracy (random guessing would give 4%) and scene ranking with average rank in the top 4% (random guessing would give 50%). The key ingredients underlying this high level of performance are (a) the use of the Shared Response Model (SRM) and its variant SRM-ICA (Chen et al. , 2015; Zhang et al. , 2016) to aggregate fMRI data from multiple subjects, both of which are shown to be superior to standard PCA in producing low-dimensional representations for the tasks in this paper; (b) a sentence embedding technique adapted from the natural language processing (NLP) literature (Arora et al. , 2017) that produces semantic vector representation of the annotations; (c) using previous timestep information in the featurization of the predictor data. These optimizations in how we featurize the fMRI data and text annotations provide a substantial improvement in classification performance, relative to standard approaches.

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NeurIPS Conference 2015 Conference Paper

A Reduced-Dimension fMRI Shared Response Model

Po-Hsuan (Cameron) Chen
Janice Chen
Yaara Yeshurun
Uri Hasson
James Haxby
Peter Ramadge

Multi-subject fMRI data is critical for evaluating the generality and validity of findings across subjects, and its effective utilization helps improve analysis sensitivity. We develop a shared response model for aggregating multi-subject fMRI data that accounts for different functional topographies among anatomically aligned datasets. Our model demonstrates improved sensitivity in identifying a shared response for a variety of datasets and anatomical brain regions of interest. Furthermore, by removing the identified shared response, it allows improved detection of group differences. The ability to identify what is shared and what is not shared opens the model to a wide range of multi-subject fMRI studies.

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NeurIPS Conference 2012 Conference Paper

Kernel Hyperalignment

Alexander Lorbert
Peter Ramadge

We offer a regularized, kernel extension of the multi-set, orthogonal Procrustes problem, or hyperalignment. Our new method, called Kernel Hyperalignment, expands the scope of hyperalignment to include nonlinear measures of similarity and enables the alignment of multiple datasets with a large number of base features. With direct application to fMRI data analysis, kernel hyperalignment is well-suited for multi-subject alignment of large ROIs, including the entire cortex. We conducted experiments using real-world, multi-subject fMRI data.

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NeurIPS Conference 2011 Conference Paper

Learning Sparse Representations of High Dimensional Data on Large Scale Dictionaries

Zhen Xiang
Hao Xu
Peter Ramadge

Learning sparse representations on data adaptive dictionaries is a state-of-the-art method for modeling data. But when the dictionary is large and the data dimension is high, it is a computationally challenging problem. We explore three aspects of the problem. First, we derive new, greatly improved screening tests that quickly identify codewords that are guaranteed to have zero weights. Second, we study the properties of random projections in the context of learning sparse representations. Finally, we develop a hierarchical framework that uses incremental random projections and screening to learn, in small stages, a hierarchically structured dictionary for sparse representations. Empirical results show that our framework can learn informative hierarchical sparse representations more efficiently.

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NeurIPS Conference 2009 Conference Paper

Boosting with Spatial Regularization

Yongxin Xi
Uri Hasson
Peter Ramadge
Zhen Xiang

By adding a spatial regularization kernel to a standard loss function formulation of the boosting problem, we develop a framework for spatially informed boosting. From this regularized loss framework we derive an efficient boosting algorithm that uses additional weights/priors on the base classifiers. We prove that the proposed algorithm exhibits a ``grouping effect, which encourages the selection of all spatially local, discriminative base classifiers. The algorithms primary advantage is in applications where the trained classifier is used to identify the spatial pattern of discriminative information, e. g. the voxel selection problem in fMRI. We demonstrate the algorithms performance on various data sets.

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NeurIPS Conference 2009 Conference Paper

fMRI-Based Inter-Subject Cortical Alignment Using Functional Connectivity

Bryan Conroy
Ben Singer
James Haxby
Peter Ramadge

The inter-subject alignment of functional MRI (fMRI) data is important for improving the statistical power of fMRI group analyses. In contrast to existing anatomically-based methods, we propose a novel multi-subject algorithm that derives a functional correspondence by aligning spatial patterns of functional connectivity across a set of subjects. We test our method on fMRI data collected during a movie viewing experiment. By cross-validating the results of our algorithm, we show that the correspondence successfully generalizes to a secondary movie dataset not used to derive the alignment.

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