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Pan Li 0005

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25 papers

1 author row

ICLR Conference 2025 Conference Paper

Convergent Privacy Loss of Noisy-SGD without Convexity and Smoothness

Eli Chien
Pan Li 0005

We study the Differential Privacy (DP) guarantee of hidden-state Noisy-SGD algorithms over a bounded domain. Standard privacy analysis for Noisy-SGD assumes all internal states are revealed, which leads to a divergent R\'enyi DP bound with respect to the number of iterations. Ye & Shokri (2022) and Altschuler & Talwar (2022) proved convergent bounds for smooth (strongly) convex losses, and raise open questions about whether these assumptions can be relaxed. We provide positive answers by proving convergent R\'enyi DP bound for non-convex non-smooth losses, where we show that requiring losses to have H\"older continuous gradient is sufficient. We also provide a strictly better privacy bound compared to state-of-the-art results for smooth strongly convex losses. Our analysis relies on the improvement of shifted divergence analysis in multiple aspects, including forward Wasserstein distance tracking, identifying the optimal shifts allocation, and the H\"older reduction lemma. Our results further elucidate the benefit of hidden-state analysis for DP and its applicability.

ICML Conference 2025 Conference Paper

Generalization Principles for Inference over Text-Attributed Graphs with Large Language Models

Haoyu Peter Wang
Shikun Liu
Rongzhe Wei
Pan Li 0005

Large language models (LLMs) have recently been introduced to graph learning, aiming to extend their zero-shot generalization success to tasks where labeled graph data is scarce. Among these applications, inference over text-attributed graphs (TAGs) presents unique challenges: existing methods struggle with LLMs’ limited context length for processing large node neighborhoods and the misalignment between node embeddings and the LLM token space. To address these issues, we establish two key principles for ensuring generalization and derive the framework LLM-BP accordingly: (1) Unifying the attribute space with task-adaptive embeddings, where we leverage LLM-based encoders and task-aware prompting to enhance generalization of the text attribute embeddings; (2) Developing a generalizable graph information aggregation mechanism, for which we adopt belief propagation with LLM-estimated parameters that adapt across graphs. Evaluations on 11 real-world TAG benchmarks demonstrate that LLM-BP significantly outperforms existing approaches, achieving 8. 10% improvement with task-conditional embeddings and an additional 1. 71% gain from adaptive aggregation. The code and task-adaptive embeddings are publicly available.

ICLR Conference 2025 Conference Paper

LayerDAG: A Layerwise Autoregressive Diffusion Model for Directed Acyclic Graph Generation

Mufei Li
Viraj Shitole
Eli Chien
Changhai Man
Zhaodong Wang
Srinivas
Ying Zhang
Tushar Krishna

Directed acyclic graphs (DAGs) serve as crucial data representations in domains such as hardware synthesis and compiler/program optimization for computing systems. DAG generative models facilitate the creation of synthetic DAGs, which can be used for benchmarking computing systems while preserving intellectual property. However, generating realistic DAGs is challenging due to their inherent directional and logical dependencies. This paper introduces LayerDAG, an autoregressive diffusion model, to address these challenges. LayerDAG decouples the strong node dependencies into manageable units that can be processed sequentially. By interpreting the partial order of nodes as a sequence of bipartite graphs, LayerDAG leverages autoregressive generation to model directional dependencies and employs diffusion models to capture logical dependencies within each bipartite graph. Comparative analyses demonstrate that LayerDAG outperforms existing DAG generative models in both expressiveness and generalization, particularly for generating large-scale DAGs with up to 400 nodes—a critical scenario for system benchmarking. Extensive experiments on both synthetic and real-world flow graphs from various computing platforms show that LayerDAG generates valid DAGs with superior statistical properties and benchmarking performance. The synthetic DAGs generated by LayerDAG enhance the training of ML-based surrogate models, resulting in improved accuracy in predicting performance metrics of real-world DAGs across diverse computing platforms.

ICML Conference 2025 Conference Paper

Rethinking Addressing in Language Models via Contextualized Equivariant Positional Encoding

Jiajun Zhu
Peihao Wang
Ruisi Cai
Jason D. Lee
Pan Li 0005
Zhangyang Wang

Transformers rely on both content-based and position-based addressing mechanisms to make predictions, but existing positional encoding techniques often diminish the effectiveness of position-based addressing. Many current methods enforce rigid patterns in attention maps, limiting the ability to model long-range dependencies and adapt to diverse tasks. Additionally, most positional encodings are learned as general biases, lacking the specialization required for different instances within a dataset. To address this, we propose con T extualized equivari A nt P osition E ncoding ( TAPE ), a novel framework that enhances positional embeddings by incorporating sequence content across layers. TAPE introduces dynamic, context-aware positional encodings, overcoming the constraints of traditional fixed patterns. We show that TAPE can provably facilitate LLM reasoning ability by emulating a broader class of algorithms. By enforcing permutation and orthogonal equivariance, TAPE ensures the stability of positional encodings during updates, improving long-context ability. Our method can be easily integrated into pre-trained transformers, offering parameter-efficient fine-tuning with minimal overhead. Extensive experiments show that TAPE achieves superior performance in language modeling, arithmetic reasoning, and long-context retrieval tasks compared to existing positional embedding techniques.

ICLR Conference 2025 Conference Paper

Simple is Effective: The Roles of Graphs and Large Language Models in Knowledge-Graph-Based Retrieval-Augmented Generation

Mufei Li
Siqi Miao 0001
Pan Li 0005

Large Language Models (LLMs) demonstrate strong reasoning abilities but face limitations such as hallucinations and outdated knowledge. Knowledge Graph (KG)-based Retrieval-Augmented Generation (RAG) addresses these issues by grounding LLM outputs in structured external knowledge from KGs. However, current KG-based RAG frameworks still struggle to optimize the trade-off between retrieval effectiveness and efficiency in identifying a suitable amount of relevant graph information for the LLM to digest. We introduce SubgraphRAG, extending the KG-based RAG framework that retrieves subgraphs and leverages LLMs for reasoning and answer prediction. Our approach innovatively integrates a lightweight multilayer perceptron (MLP) with a parallel triple-scoring mechanism for efficient and flexible subgraph retrieval while encoding directional structural distances to enhance retrieval effectiveness. The size of retrieved subgraphs can be flexibly adjusted to match the query's needs and the downstream LLM's capabilities. This design strikes a balance between model complexity and reasoning power, enabling scalable and generalizable retrieval processes. Notably, based on our retrieved subgraphs, smaller LLMs like Llama3.1-8B-Instruct deliver competitive results with explainable reasoning, while larger models like GPT-4o achieve state-of-the-art accuracy compared with previous baselines—all without fine-tuning. Extensive evaluations on the WebQSP and CWQ benchmarks highlight SubgraphRAG's strengths in efficiency, accuracy, and reliability by reducing hallucinations and improving response grounding.

ICML Conference 2025 Conference Paper

Unbiased Recommender Learning from Implicit Feedback via Weakly Supervised Learning

Hao Wang 0049
Zhichao Chen 0001
Haotian Wang 0001
Yanchao Tan
Pan Li 0005
Tianqiao Liu
Xu Chen 0017
Haoxuan Li 0001

Implicit feedback recommendation is challenged by the missing negative feedback essential for effective model training. Existing methods often resort to negative sampling, a technique that assumes unlabeled interactions as negative samples. This assumption risks misclassifying potential positive samples within the unlabeled data, thereby undermining model performance. To address this issue, we introduce PURL, a model-agnostic framework that reframes implicit feedback recommendation as a weakly supervised learning task, eliminating the need for negative samples. However, its unbiasedness hinges on the accurate estimation of the class prior. To address this challenge, we propose Progressive Proximal Transport (PPT), which estimates the class prior by minimizing the proximal transport cost between positive and unlabeled samples. Experiments on three real-world datasets validate the efficacy of PURL in terms of improved recommendation quality. Code is available at https: //github. com/HowardZJU/weakrec.

ICML Conference 2025 Conference Paper

Underestimated Privacy Risks for Minority Populations in Large Language Model Unlearning

Rongzhe Wei
Mufei Li
Mohsen Ghassemi
Eleonora Kreacic
Yifan Li
Xiang Yue
Bo Li 0026
Vamsi K. Potluru

Large Language Models (LLMs) embed sensitive, human-generated data, prompting the need for unlearning methods. Although certified unlearning offers strong privacy guarantees, its restrictive assumptions make it unsuitable for LLMs, giving rise to various heuristic approaches typically assessed through empirical evaluations. These standard evaluations randomly select data for removal, apply unlearning techniques, and use membership inference attacks (MIAs) to compare unlearned models against models retrained without the removed data. However, to ensure robust privacy protections for every data point, it is essential to account for scenarios in which certain data subsets face elevated risks. Prior research suggests that outliers, particularly including data tied to minority groups, often exhibit higher memorization propensity which indicates they may be more difficult to unlearn. Building on these insights, we introduce a complementary, minority-aware evaluation framework to highlight blind spots in existing frameworks. We substantiate our findings with carefully designed experiments, using canaries with personally identifiable information (PII) to represent these minority subsets and demonstrate that they suffer at least 20% higher privacy leakage across various unlearning methods, MIAs, datasets, and LLM scales. Our proposed minority-aware evaluation framework marks an essential step toward more equitable and comprehensive assessments of LLM unlearning efficacy.

ICLR Conference 2025 Conference Paper

Understanding and Mitigating Bottlenecks of State Space Models through the Lens of Recency and Over-smoothing

Peihao Wang
Ruisi Cai
Yuehao Wang
Jiajun Zhu
Pragya Srivastava
Zhangyang Wang
Pan Li 0005

Structured State Space Models (SSMs) have emerged as alternatives to transformers. While SSMs are often regarded as effective in capturing long-sequence dependencies, we rigorously demonstrate that they are inherently limited by strong recency bias. Our empirical studies also reveal that this bias impairs the models' ability to recall distant information and introduces robustness issues. Our scaling experiments then discovered that deeper structures in SSMs can facilitate the learning of long contexts. However, subsequent theoretical analysis reveals that as SSMs increase in depth, they exhibit another inevitable tendency toward over-smoothing, e.g., token representations becoming increasingly indistinguishable. This *fundamental dilemma* between recency and over-smoothing hinders the scalability of existing SSMs. Inspired by our theoretical findings, we propose to *polarize* two channels of the state transition matrices in SSMs, setting them to zero and one, respectively, simultaneously addressing recency bias and over-smoothing. Experiments demonstrate that our polarization technique consistently enhances the associative recall accuracy of long-range tokens and unlocks SSMs to benefit further from deeper architectures. All source codes are released at https://github.com/VITA-Group/SSM-Bottleneck.

ICLR Conference 2025 Conference Paper

What Are Good Positional Encodings for Directed Graphs?

Yinan Huang
Haoyu Peter Wang
Pan Li 0005

Positional encodings (PEs) are essential for building powerful and expressive graph neural networks and graph transformers, as they effectively capture the relative spatial relationships between nodes. Although extensive research has been devoted to PEs in undirected graphs, PEs for directed graphs remain relatively unexplored. This work seeks to address this gap. We first introduce the notion of *Walk Profile*, a generalization of walk-counting sequences for directed graphs. A walk profile encompasses numerous structural features crucial for directed graph-relevant applications, such as program analysis and circuit performance prediction. We identify the limitations of existing PE methods in representing walk profiles and propose a novel *Multi-q Magnetic Laplacian PE*, which extends the Magnetic Laplacian eigenvector-based PE by incorporating multiple potential factors. The new PE can provably express walk profiles. Furthermore, we generalize prior basis-invariant neural networks to enable the stable use of the new PE in the complex domain. Our numerical experiments validate the expressiveness of the proposed PEs and demonstrate their effectiveness in solving sorting network satisfiability and performing well on general circuit benchmarks. Our code is available at https://github.com/Graph-COM/Multi-q-Maglap.

ICML Conference 2024 Conference Paper

Graph As Point Set

Xiyuan Wang
Pan Li 0005
Muhan Zhang

Graph is a fundamental data structure to model interconnections between entities. Set, on the contrary, stores independent elements. To learn graph representations, current Graph Neural Networks (GNNs) primarily use message passing to encode the interconnections. In contrast, this paper introduces a novel graph-to-set conversion method that bijectively transforms interconnected nodes into a set of independent points and then uses a set encoder to learn the graph representation. This conversion method holds dual significance. Firstly, it enables using set encoders to learn from graphs, thereby significantly expanding the design space of GNNs. Secondly, for Transformer, a specific set encoder, we provide a novel and principled approach to inject graph information losslessly, different from all the heuristic structural/positional encoding methods adopted in previous graph transformers. To demonstrate the effectiveness of our approach, we introduce Point Set Transformer (PST), a transformer architecture that accepts a point set converted from a graph as input. Theoretically, PST exhibits superior expressivity for both short-range substructure counting and long-range shortest path distance tasks compared to existing GNNs. Extensive experiments further validate PST’s outstanding real-world performance. Besides Transformer, we also devise a Deepset-based set encoder, which achieves performance comparable to representative GNNs, affirming the versatility of our graph-to-set method.

ICML Conference 2024 Conference Paper

Locality-Sensitive Hashing-Based Efficient Point Transformer with Applications in High-Energy Physics

Siqi Miao 0001
Zhiyuan Lu
Mia Liu
Javier M. Duarte
Pan Li 0005

This study introduces a novel transformer model optimized for large-scale point cloud processing in scientific domains such as high-energy physics (HEP) and astrophysics. Addressing the limitations of graph neural networks and standard transformers, our model integrates local inductive bias and achieves near-linear complexity with hardware-friendly regular operations. One contribution of this work is the quantitative analysis of the error-complexity tradeoff of various sparsification techniques for building efficient transformers. Our findings highlight the superiority of using locality-sensitive hashing (LSH), especially OR & AND-construction LSH, in kernel approximation for large-scale point cloud data with local inductive bias. Based on this finding, we propose LSH-based Efficient Point Transformer ( HEPT ), which combines E$^2$LSH with OR & AND constructions and is built upon regular computations. HEPT demonstrates remarkable performance on two critical yet time-consuming HEP tasks, significantly outperforming existing GNNs and transformers in accuracy and computational speed, marking a significant advancement in geometric deep learning and large-scale scientific data processing. Our code is available at https: //github. com/Graph-COM/HEPT.

ICLR Conference 2024 Conference Paper

On the Stability of Expressive Positional Encodings for Graphs

Yinan Huang
William Lu
Joshua Robinson 0001
Yu Yang 0019
Muhan Zhang
Stefanie Jegelka
Pan Li 0005

Designing effective positional encodings for graphs is key to building powerful graph transformers and enhancing message-passing graph neural networks. Although widespread, using Laplacian eigenvectors as positional encodings faces two fundamental challenges: (1) *Non-uniqueness*: there are many different eigendecompositions of the same Laplacian, and (2) *Instability*: small perturbations to the Laplacian could result in completely different eigenspaces, leading to unpredictable changes in positional encoding. Despite many attempts to address non-uniqueness, most methods overlook stability, leading to poor generalization on unseen graph structures. We identify the cause of instability to be the use of "hard partition'' of eigenspaces. Hence, we introduce Stable and Expressive Positional Encodings (SPE), an architecture for processing eigenvectors that uses eigenvalues to ``softly partition'' eigenspaces. SPE is the first architecture that is (1) provably stable, and (2) universally expressive for basis invariant functions whilst respecting all symmetries of eigenvectors. Besides guaranteed stability, we prove that SPE is at least as expressive as existing methods, and highly capable of counting graph structures. Finally, we evaluate the effectiveness of our method on molecular property prediction, and out-of-distribution generalization tasks, finding improved generalization compared to existing positional encoding methods. Our code is available at https://github.com/Graph-COM/SPE.

ICML Conference 2024 Conference Paper

Pairwise Alignment Improves Graph Domain Adaptation

Shikun Liu
Deyu Zou
Han Zhao 0002
Pan Li 0005

Graph-based methods, pivotal for label inference over interconnected objects in many real-world applications, often encounter generalization challenges, if the graph used for model training differs significantly from the graph used for testing. This work delves into Graph Domain Adaptation (GDA) to address the unique complexities of distribution shifts over graph data, where interconnected data points experience shifts in features, labels, and in particular, connecting patterns. We propose a novel, theoretically principled method, Pairwise Alignment (Pair-Align) to counter graph structure shift by mitigating conditional structure shift (CSS) and label shift (LS). Pair-Align uses edge weights to recalibrate the influence among neighboring nodes to handle CSS and adjusts the classification loss with label weights to handle LS. Our method demonstrates superior performance in real-world applications, including node classification with region shift in social networks, and the pileup mitigation task in particle colliding experiments. For the first application, we also curate the largest dataset by far for GDA studies. Our method shows strong performance in synthetic and other existing benchmark datasets.

ICLR Conference 2024 Conference Paper

Polynomial Width is Sufficient for Set Representation with High-dimensional Features

Peihao Wang
Shenghao Yang 0002
Shu Li
Zhangyang Wang
Pan Li 0005

Set representation has become ubiquitous in deep learning for modeling the inductive bias of neural networks that are insensitive to the input order. DeepSets is the most widely used neural network architecture for set representation. It involves embedding each set element into a latent space with dimension $L$, followed by a sum pooling to obtain a whole-set embedding, and finally mapping the whole-set embedding to the output. In this work, we investigate the impact of the dimension $L$ on the expressive power of DeepSets. Previous analyses either oversimplified high-dimensional features to be one-dimensional features or were limited to complex analytic activations, thereby diverging from practical use or resulting in $L$ that grows exponentially with the set size $N$ and feature dimension $D$. To investigate the minimal value of $L$ that achieves sufficient expressive power, we present two set-element embedding layers: (a) linear + power activation (LP) and (b) linear + exponential activations (LE). We demonstrate that $L$ being $\operatorname{poly}(N, D)$ is sufficient for set representation using both embedding layers. We also provide a lower bound of $L$ for the LP embedding layer. Furthermore, we extend our results to permutation-equivariant set functions and the complex field.

ICLR Conference 2024 Conference Paper

Towards Poisoning Fair Representations

Tianci Liu 0003
Haoyu Wang 0004
Feijie Wu
Hengtong Zhang
Pan Li 0005
Lu Su 0001
Jing Gao 0004

Fair machine learning seeks to mitigate model prediction bias against certain demographic subgroups such as elder and female. Recently, fair representation learning (FRL) trained by deep neural networks has demonstrated superior performance, whereby representations containing no demographic information are inferred from the data and then used as the input to classification or other downstream tasks. Despite the development of FRL methods, their vulnerability under data poisoning attack, a popular protocol to benchmark model robustness under adversarial scenarios, is under-explored. Data poisoning attacks have been developed for classical fair machine learning methods which incorporate fairness constraints into shallow-model classifiers. Nonetheless, these attacks fall short in FRL due to notably different fairness goals and model architectures. This work proposes the first data poisoning framework attacking FRL. We induce the model to output unfair representations that contain as much demographic information as possible by injecting carefully crafted poisoning samples into the training data. This attack entails a prohibitive bilevel optimization, wherefore an effective approximated solution is proposed. A theoretical analysis on the needed number of poisoning samples is derived and sheds light on defending against the attack. Experiments on benchmark fairness datasets and state-of-the-art fair representation learning models demonstrate the superiority of our attack.

ICLR Conference 2023 Conference Paper

Equivariant Hypergraph Diffusion Neural Operators

Peihao Wang
Shenghao Yang 0002
Yunyu Liu
Zhangyang Wang
Pan Li 0005

Hypergraph neural networks (HNNs) using neural networks to encode hypergraphs provide a promising way to model higher-order relations in data and further solve relevant prediction tasks built upon such higher-order relations. However, higher-order relations in practice contain complex patterns and are often highly irregular. So, it is often challenging to design an HNN that suffices to express those relations while keeping computational efficiency. Inspired by hypergraph diffusion algorithms, this work proposes a new HNN architecture named ED-HNN, which provably approximates any continuous equivariant hypergraph diffusion operators that can model a wide range of higher-order relations. ED-HNN can be implemented efficiently by combining star expansions of hypergraphs with standard message passing neural networks. ED-HNN further shows great superiority in processing heterophilic hypergraphs and constructing deep models. We evaluate ED-HNN for node classification on nine real-world hypergraph datasets. ED-HNN uniformly outperforms the best baselines over these nine datasets and achieves more than 2%$\uparrow$ in prediction accuracy over four datasets therein. Our code is available at: https://github.com/Graph-COM/ED-HNN.

ICLR Conference 2023 Conference Paper

Interpretable Geometric Deep Learning via Learnable Randomness Injection

Siqi Miao 0001
Yunan Luo
Mia Liu
Pan Li 0005

Point cloud data is ubiquitous in scientific fields. Recently, geometric deep learning (GDL) has been widely applied to solve prediction tasks with such data. However, GDL models are often complicated and hardly interpretable, which poses concerns to scientists who are to deploy these models in scientific analysis and experiments. This work proposes a general mechanism, learnable randomness injection (LRI), which allows building inherently interpretable models based on general GDL backbones. LRI-induced models, once trained, can detect the points in the point cloud data that carry information indicative of the prediction label. We also propose four datasets from real scientific applications that cover the domains of high-energy physics and biochemistry to evaluate the LRI mechanism. Compared with previous post-hoc interpretation methods, the points detected by LRI align much better and stabler with the ground-truth patterns that have actual scientific meanings. LRI is grounded by the information bottleneck principle, and thus LRI-induced models are also more robust to distribution shifts between training and test scenarios. Our code and datasets are available at https://github.com/Graph-COM/LRI.

ICML Conference 2023 Conference Paper

Structural Re-weighting Improves Graph Domain Adaptation

Shikun Liu
Tianchun Li
Yongbin Feng
Nhan Tran
Han Zhao 0002
Qiang Qiu 0001
Pan Li 0005

In many real-world applications, graph-structured data used for training and testing have differences in distribution, such as in high energy physics (HEP) where simulation data used for training may not match real experiments. Graph domain adaptation (GDA) is a method used to address these differences. However, current GDA primarily works by aligning the distributions of node representations output by a single graph neural network encoder shared across the training and testing domains, which may often yield sub-optimal solutions. This work examines different impacts of distribution shifts caused by either graph structure or node attributes and identifies a new type of shift, named conditional structure shift (CSS), which current GDA approaches are provably sub-optimal to deal with. A novel approach, called structural reweighting (StruRW), is proposed to address this issue and is tested on synthetic graphs, four benchmark datasets, and a new application in HEP. StruRW has shown significant performance improvement over the baselines in the settings with large graph structure shifts, and reasonable performance improvement when node attribute shift dominates.

ICLR Conference 2023 Conference Paper

Unsupervised Learning for Combinatorial Optimization Needs Meta Learning

Haoyu Peter Wang
Pan Li 0005

A general framework of unsupervised learning for combinatorial optimization (CO) is to train a neural network whose output gives a problem solution by directly optimizing the CO objective. Albeit with some advantages over traditional solvers, current frameworks optimize an averaged performance over the distribution of historical problem instances, which misaligns with the actual goal of CO that looks for a good solution to every future encountered instance. With this observation, we propose a new objective of unsupervised learning for CO where the goal of learning is to search for good initialization for future problem instances rather than give direct solutions. We propose a meta-learning-based training pipeline for this new objective. Our method achieves good performance. We observe that even the initial solution given by our model before fine-tuning can significantly outperform the baselines under various evaluation settings including evaluation across multiple datasets, and the case with big shifts in the problem scale. The reason we conjecture is that meta-learning-based training lets the model be loosely tied to each local optimum for a training instance while being more adaptive to the changes of optimization landscapes across instances.

ICLR Conference 2022 Conference Paper

Equivariant and Stable Positional Encoding for More Powerful Graph Neural Networks

Haorui Wang
Haoteng Yin
Muhan Zhang
Pan Li 0005

Graph neural networks (GNN) have shown great advantages in many graph-based learning tasks but often fail to predict accurately for a task-based on sets of nodes such as link/motif prediction and so on. Many works have recently proposed to address this problem by using random node features or node distance features. However, they suffer from either slow convergence, inaccurate prediction, or high complexity. In this work, we revisit GNNs that allow using positional features of nodes given by positional encoding (PE) techniques such as Laplacian Eigenmap, Deepwalk, etc. GNNs with PE often get criticized because they are not generalizable to unseen graphs (inductive) or stable. Here, we study these issues in a principled way and propose a provable solution, a class of GNN layers termed PEG with rigorous mathematical analysis. PEG uses separate channels to update the original node features and positional features. PEG imposes permutation equivariance w.r.t. the original node features and rotation equivariance w.r.t. the positional features simultaneously. Extensive link prediction experiments over 8 real-world networks demonstrate the advantages of PEG in generalization and scalability. Code is available at https://github.com/Graph-COM/PEG.

ICLR Conference 2022 Conference Paper

Graph Auto-Encoder via Neighborhood Wasserstein Reconstruction

Mingyue Tang
Pan Li 0005
Carl Yang 0001

Graph neural networks (GNNs) have drawn significant research attention recently, mostly under the setting of semi-supervised learning. When task-agnostic representations are preferred or supervision is simply unavailable, the auto-encoder framework comes in handy with a natural graph reconstruction objective for unsupervised GNN training. However, existing graph auto-encoders are designed to reconstruct the direct links, so GNNs trained in this way are only optimized towards proximity-oriented graph mining tasks, and will fall short when the topological structures matter. In this work, we revisit the graph encoding process of GNNs which essentially learns to encode the neighborhood information of each node into an embedding vector, and propose a novel graph decoder to reconstruct the entire neighborhood information regarding both proximity and structure via Neighborhood Wasserstein Reconstruction (NWR). Specifically, from the GNN embedding of each node, NWR jointly predicts its node degree and neighbor feature distribution, where the distribution prediction adopts an optimal-transport loss based on the Wasserstein distance. Extensive experiments on both synthetic and real-world network datasets show that the unsupervised node representations learned with NWR have much more advantageous in structure-oriented graph mining tasks, while also achieving competitive performance in proximity-oriented ones.

ICML Conference 2022 Conference Paper

Interpretable and Generalizable Graph Learning via Stochastic Attention Mechanism

Siqi Miao 0001
Mia Liu
Pan Li 0005

Interpretable graph learning is in need as many scientific applications depend on learning models to collect insights from graph-structured data. Previous works mostly focused on using post-hoc approaches to interpret pre-trained models (graph neural networks in particular). They argue against inherently interpretable models because the good interpretability of these models is often at the cost of their prediction accuracy. However, those post-hoc methods often fail to provide stable interpretation and may extract features that are spuriously correlated with the task. In this work, we address these issues by proposing Graph Stochastic Attention (GSAT). Derived from the information bottleneck principle, GSAT injects stochasticity to the attention weights to block the information from task-irrelevant graph components while learning stochasticity-reduced attention to select task-relevant subgraphs for interpretation. The selected subgraphs provably do not contain patterns that are spuriously correlated with the task under some assumptions. Extensive experiments on eight datasets show that GSAT outperforms the state-of-the-art methods by up to 20% in interpretation AUC and 5% in prediction accuracy. Our code is available at https: //github. com/Graph-COM/GSAT.

ICLR Conference 2021 Conference Paper

Adaptive Universal Generalized PageRank Graph Neural Network

Eli Chien
Jianhao Peng
Pan Li 0005
Olgica Milenkovic

In many important graph data processing applications the acquired information includes both node features and observations of the graph topology. Graph neural networks (GNNs) are designed to exploit both sources of evidence but they do not optimally trade-off their utility and integrate them in a manner that is also universal. Here, universality refers to independence on homophily or heterophily graph assumptions. We address these issues by introducing a new Generalized PageRank (GPR) GNN architecture that adaptively learns the GPR weights so as to jointly optimize node feature and topological information extraction, regardless of the extent to which the node labels are homophilic or heterophilic. Learned GPR weights automatically adjust to the node label pattern, irrelevant on the type of initialization, and thereby guarantee excellent learning performance for label patterns that are usually hard to handle. Furthermore, they allow one to avoid feature over-smoothing, a process which renders feature information nondiscriminative, without requiring the network to be shallow. Our accompanying theoretical analysis of the GPR-GNN method is facilitated by novel synthetic benchmark datasets generated by the so-called contextual stochastic block model. We also compare the performance of our GNN architecture with that of several state-of-the-art GNNs on the problem of node-classification, using well-known benchmark homophilic and heterophilic datasets. The results demonstrate that GPR-GNN offers significant performance improvement compared to existing techniques on both synthetic and benchmark data.

ICLR Conference 2021 Conference Paper

Inductive Representation Learning in Temporal Networks via Causal Anonymous Walks

Yanbang Wang
Yen-Yu Chang
Yunyu Liu
Jure Leskovec
Pan Li 0005

Temporal networks serve as abstractions of many real-world dynamic systems. These networks typically evolve according to certain laws, such as the law of triadic closure, which is universal in social networks. Inductive representation learning of temporal networks should be able to capture such laws and further be applied to systems that follow the same laws but have not been unseen during the training stage. Previous works in this area depend on either network node identities or rich edge attributes and typically fail to extract these laws. Here, we propose {\em Causal Anonymous Walks (CAWs)} to inductively represent a temporal network. CAWs are extracted by temporal random walks and work as automatic retrieval of temporal network motifs to represent network dynamics while avoiding the time-consuming selection and counting of those motifs. CAWs adopt a novel anonymization strategy that replaces node identities with the hitting counts of the nodes based on a set of sampled walks to keep the method inductive, and simultaneously establish the correlation between motifs. We further propose a neural-network model CAW-N to encode CAWs, and pair it with a CAW sampling strategy with constant memory and time cost to support online training and inference. CAW-N is evaluated to predict links over 6 real temporal networks and uniformly outperforms previous SOTA methods by averaged 15\% AUC gain in the inductive setting. CAW-N also outperforms previous methods in 5 out of the 6 networks in the transductive setting.

ICML Conference 2018 Conference Paper

Submodular Hypergraphs: p-Laplacians, Cheeger Inequalities and Spectral Clustering

Pan Li 0005
Olgica Milenkovic

We introduce submodular hypergraphs, a family of hypergraphs that have different submodular weights associated with different cuts of hyperedges. Submodular hypergraphs arise in cluster- ing applications in which higher-order structures carry relevant information. For such hypergraphs, we define the notion of p-Laplacians and derive corresponding nodal domain theorems and k-way Cheeger inequalities. We conclude with the description of algorithms for computing the spectra of 1- and 2-Laplacians that constitute the basis of new spectral hypergraph clustering methods.