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Lingbing Guo

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11 papers

2 author rows

AAAI Conference 2026 Conference Paper

rMMEA: Robust Multi-Modal Entity Alignment with Missing and Noise Visual Modality

Lingbing Guo
Zhuo Chen
Yichi Zhang
Wenbin Guo
Haonan Yang
Zhao Li
Zirui Chen
Xin Wang

Recently, multi-modal embedding methods have flourished in entity alignment. As state-of-the-art approaches evolve rapidly, visual modality (i.e., images) missing emerges as a critical challenge. While visual modality typically offers the most informative signals in multi-modal entity alignment (MMEA), it is frequently unavailable for many entities. The existing methods commonly use dummy vectors to represent visual-missing embeddings, which negatively impacts both model training and inference. In this paper, we propose robust multi-modal entity alignment (rMMEA), which leverages ranking-based knowledge distillation and mutual information (MI) estimation to address missing modalities while enhancing noise robustness. Unlike conventional teacher-student distillation that requires the student to replicate teacher outputs, our rMMEA learns soft rankings from pure and complete modality sides while capturing implicit key semantics of teacher embeddings through mutual information maximization, allowing rMMEA to avoid strict point-to-point alignment. The experimental results across multiple benchmarks and settings demonstrate that rMMEA significantly outperforms the state-of-the-art anti-modality-missing methods in terms of effectiveness and efficiency.

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AAAI Conference 2025 Conference Paper

K-ON: Stacking Knowledge on the Head Layer of Large Language Model

Lingbing Guo
Yichi Zhang
Zhongpu Bo
Zhuo Chen
Mengshu Sun
Zhiqiang Zhang
Wen Zhang
Huajun Chen

Recent advancements in large language models (LLMs) have significantly improved various natural language processing (NLP) tasks. Typically, LLMs are trained to predict the next token, aligning well with many NLP tasks. However, in knowledge graph (KG) scenarios, entities are the fundamental units and identifying an entity requires at least several tokens. This leads to a granularity mismatch between KGs and natural languages. To address this issue, we propose K-ON, which integrates KG knowledge into the LLM by employing multiple head layers for next k-step prediction. K-ON can not only generate entity-level results in one step, but also enables contrastive loss against entities, which is the most powerful tool in KG representation learning. Experimental results show that K-ON outperforms state-of-the-art methods that incorporate text and even the other modalities.

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ICLR Conference 2025 Conference Paper

Multiple Heads are Better than One: Mixture of Modality Knowledge Experts for Entity Representation Learning

Yichi Zhang 0009
Zhuo Chen 0007
Lingbing Guo
Yajing Xu
Bin-Bin Hu
Ziqi Liu
Wen Zhang 0015
Huajun Chen

Learning high-quality multi-modal entity representations is an important goal of multi-modal knowledge graph (MMKG) representation learning, which can en- hance reasoning tasks within the MMKGs, such as MMKG completion (MMKGC). The main challenge is to collaboratively model the structural information concealed in massive triples and the multi-modal features of the entities. Existing methods focus on crafting elegant entity-wise multi-modal fusion strategies, yet they over- look the utilization of multi-perspective features concealed within the modalities under diverse relational contexts. To address this issue, we introduce a novel framework with Mixture of Modality Knowledge experts (MOMOK for short) to learn adaptive multi-modal entity representations for better MMKGC. We design relation-guided modality knowledge experts to acquire relation-aware modality embeddings and integrate the predictions from multi-modalities to achieve joint decisions. Additionally, we disentangle the experts by minimizing their mutual information. Experiments on four public MMKG benchmarks demonstrate the outstanding performance of MOMOK under complex scenarios. Our code and data are available at https://github.com/zjukg/MoMoK.

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AAAI Conference 2025 Conference Paper

Tokenization, Fusion, and Augmentation: Towards Fine-grained Multi-modal Entity Representation

Yichi Zhang
Zhuo Chen
Lingbing Guo
Yajing Xu
Binbin Hu
Ziqi Liu
Wen Zhang
Huajun Chen

Multi-modal knowledge graph completion (MMKGC) aims to discover unobserved knowledge from given multi-modal knowledge graphs (MMKG), collaboratively leveraging structural information from the triples and multi-modal information of the entities to overcome the inherent incompleteness. Existing MMKGC methods usually extract multi-modal features with pre-trained models and employ fusion modules to integrate multi-modal features for the entities. This often results in coarse handling of multi-modal entity information, overlooking the nuanced, fine-grained semantic details and their complex interactions. To tackle this shortfall, we introduce a novel framework MyGO to tokenize, fuse, and augment the fine-grained multi-modal representations of entities and enhance the MMKGC performance. Motivated by the tokenization technology, MyGO tokenizes multi-modal entity information as fine-grained discrete tokens and learns entity representations with a cross-modal entity encoder. To further augment the multi-modal representations, MyGO incorporates fine-grained contrastive learning to highlight the specificity of the entity representations. Experiments on standard MMKGC benchmarks reveal that our method surpasses 19 of the latest models, underlining its superior performance.

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ICLR Conference 2024 Conference Paper

Domain-Agnostic Molecular Generation with Chemical Feedback

Yin Fang
Ningyu Zhang 0001
Zhuo Chen 0007
Lingbing Guo
Xiaohui Fan
Huajun Chen

The generation of molecules with desired properties has become increasingly popular, revolutionizing the way scientists design molecular structures and providing valuable support for chemical and drug design. However, despite the potential of language models in molecule generation, they face challenges such as generating syntactically or chemically flawed molecules, having narrow domain focus, and struggling to create diverse and feasible molecules due to limited annotated data or external molecular databases. To tackle these challenges, we introduce MolGen, a pre-trained molecular language model tailored specifically for molecule generation. Through the reconstruction of over 100 million molecular SELFIES, MolGen internalizes structural and grammatical insights. This is further enhanced by domain-agnostic molecular prefix tuning, fostering robust knowledge transfer across diverse domains. Importantly, our chemical feedback paradigm steers the model away from "molecular hallucinations", ensuring alignment between the model's estimated probabilities and real-world chemical preferences. Extensive experiments on well-known benchmarks underscore MolGen's optimization capabilities in properties such as penalized logP, QED, and molecular docking. Additional analyses confirm its proficiency in accurately capturing molecule distributions, discerning intricate structural patterns, and efficiently exploring the chemical space (https://github.com/zjunlp/MolGen).

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NeurIPS Conference 2024 Conference Paper

MKGL: Mastery of a Three-Word Language

Lingbing Guo
Zhongpu Bo
Zhuo Chen
Yichi Zhang
Jiaoyan Chen
Yarong Lan
Mengshu Sun
Zhiqiang Zhang

Large language models (LLMs) have significantly advanced performance across a spectrum of natural language processing (NLP) tasks. Yet, their application to knowledge graphs (KGs), which describe facts in the form of triplets and allow minimal hallucinations, remains an underexplored frontier. In this paper, we investigate the integration of LLMs with KGs by introducing a specialized KG Language (KGL), where a sentence precisely consists of an entity noun, a relation verb, and ends with another entity noun. Despite KGL's unfamiliar vocabulary to the LLM, we facilitate its learning through a tailored dictionary and illustrative sentences, and enhance context understanding via real-time KG context retrieval and KGL token embedding augmentation. Our results reveal that LLMs can achieve fluency in KGL, drastically reducing errors compared to conventional KG embedding methods on KG completion. Furthermore, our enhanced LLM shows exceptional competence in generating accurate three-word sentences from an initial entity and interpreting new unseen terms out of KGs.

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ICLR Conference 2024 Conference Paper

Revisit and Outstrip Entity Alignment: A Perspective of Generative Models

Lingbing Guo
Zhuo Chen 0007
Jiaoyan Chen 0001
Yin Fang
Wen Zhang 0015
Huajun Chen

Recent embedding-based methods have achieved great successes in exploiting entity alignment from knowledge graph (KG) embeddings of multiple modalities. In this paper, we study embedding-based entity alignment (EEA) from a perspective of generative models. We show that EEA shares similarities with typical generative models and prove the effectiveness of the recently developed generative adversarial network (GAN)-based EEA methods theoretically. We then reveal that their incomplete objective limits the capacity on both entity alignment and entity synthesis (i.e., generating new entities). We mitigate this problem by introducing a generative EEA (GEEA) framework with the proposed mutual variational autoencoder (M-VAE) as the generative model. M-VAE enables entity conversion between KGs and generation of new entities from random noise vectors. We demonstrate the power of GEEA with theoretical analysis and empirical experiments on both entity alignment and entity synthesis tasks. The source code and datasets are available at github.com/zjukg/GEEA.

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NeurIPS Conference 2023 Conference Paper

Newton–Cotes Graph Neural Networks: On the Time Evolution of Dynamic Systems

Lingbing Guo
Weiqing Wang
Zhuo Chen
Ningyu Zhang
Zequn Sun
Yixuan Lai
Qiang Zhang
Huajun Chen

Reasoning system dynamics is one of the most important analytical approaches for many scientific studies. With the initial state of a system as input, the recent graph neural networks (GNNs)-based methods are capable of predicting the future state distant in time with high accuracy. Although these methods have diverse designs in modeling the coordinates and interacting forces of the system, we show that they actually share a common paradigm that learns the integration of the velocity over the interval between the initial and terminal coordinates. However, their integrand is constant w. r. t. time. Inspired by this observation, we propose a new approach to predict the integration based on several velocity estimations with Newton–Cotes formulas and prove its effectiveness theoretically. Extensive experiments on several benchmarks empirically demonstrate consistent and significant improvement compared with the state-of-the-art methods.

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ICML Conference 2022 Conference Paper

Understanding and Improving Knowledge Graph Embedding for Entity Alignment

Lingbing Guo
Qiang Zhang 0026
Zequn Sun 0001
Mingyang Chen 0002
Wei Hu 0007
Huajun Chen

Embedding-based entity alignment (EEA) has recently received great attention. Despite significant performance improvement, few efforts have been paid to facilitate understanding of EEA methods. Most existing studies rest on the assumption that a small number of pre-aligned entities can serve as anchors connecting the embedding spaces of two KGs. Nevertheless, no one has investigated the rationality of such an assumption. To fill the research gap, we define a typical paradigm abstracted from existing EEA methods and analyze how the embedding discrepancy between two potentially aligned entities is implicitly bounded by a predefined margin in the score function. Further, we find that such a bound cannot guarantee to be tight enough for alignment learning. We mitigate this problem by proposing a new approach, named NeoEA, to explicitly learn KG-invariant and principled entity embeddings. In this sense, an EEA model not only pursues the closeness of aligned entities based on geometric distance, but also aligns the neural ontologies of two KGs by eliminating the discrepancy in embedding distribution and underlying ontology knowledge. Our experiments demonstrate consistent and significant performance improvement against the best-performing EEA methods.

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ICML Conference 2019 Conference Paper

Learning to Exploit Long-term Relational Dependencies in Knowledge Graphs

Lingbing Guo
Zequn Sun 0001
Wei Hu 0007

We study the problem of knowledge graph (KG) embedding. A widely-established assumption to this problem is that similar entities are likely to have similar relational roles. However, existing related methods derive KG embeddings mainly based on triple-level learning, which lack the capability of capturing long-term relational dependencies of entities. Moreover, triple-level learning is insufficient for the propagation of semantic information among entities, especially for the case of cross-KG embedding. In this paper, we propose recurrent skipping networks (RSNs), which employ a skipping mechanism to bridge the gaps between entities. RSNs integrate recurrent neural networks (RNNs) with residual learning to efficiently capture the long-term relational dependencies within and between KGs. We design an end-to-end framework to support RSNs on different tasks. Our experimental results showed that RSNs outperformed state-of-the-art embedding-based methods for entity alignment and achieved competitive performance for KG completion.

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IJCAI Conference 2019 Conference Paper

Multi-view Knowledge Graph Embedding for Entity Alignment

Qingheng Zhang
Zequn Sun
Wei Hu
Muhao Chen
Lingbing Guo
Yuzhong Qu

We study the problem of embedding-based entity alignment between knowledge graphs (KGs). Previous works mainly focus on the relational structure of entities. Some further incorporate another type of features, such as attributes, for refinement. However, a vast of entity features are still unexplored or not equally treated together, which impairs the accuracy and robustness of embedding-based entity alignment. In this paper, we propose a novel framework that unifies multiple views of entities to learn embeddings for entity alignment. Specifically, we embed entities based on the views of entity names, relations and attributes, with several combination strategies. Furthermore, we design some cross-KG inference methods to enhance the alignment between two KGs. Our experiments on real-world datasets show that the proposed framework significantly outperforms the state-of-the-art embedding-based entity alignment methods. The selected views, cross-KG inference and combination strategies all contribute to the performance improvement.

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