Arrow Research search

Author name cluster

Lin Shi

Possible papers associated with this exact author name in Arrow. This page groups case-insensitive exact name matches and is not a full identity disambiguation profile.

13 papers
1 author row

Possible papers

13

JBHI Journal 2025 Journal Article

DistilCLIP-EEG: Enhancing Epileptic Seizure Detection Through Multi-modal Learning and Knowledge Distillation

  • Zexin Wang
  • Lin Shi
  • Haoyu Wu
  • Junru Luo
  • Xiangzeng Kong
  • Jun Qi

Epilepsy is a prevalent neurological disorder marked by sudden, brief episodes of excessive neuronal activity caused by abnormal electrical discharges, which may lead to some mental disorders. Most existing deep learning methods for epilepsy detection rely solely on unimodal EEG signals, neglecting the potential benefits of multimodal information. To address this, we propose a novel multimodal model, DistilCLIP-EEG, based on the CLIP framework, which integrates both EEG signals and text descriptions to capture comprehensive features of epileptic seizures. The model involves an EEG encoder based on the Conformer architecture as a text encoder, the proposed Learnable BERT (BERT-LP) as prompt learning within the encoders. Both operate in a shared latent space for effective cross-modal representation learning. To enhance efficiency and adaptability, we introduce a knowledge distillation method where the trained DistilCLIP-EEG serves as a teacher to guide a more compact student model to reduce training complexity and time. On the TUSZ, AUBMC, and CHB-MIT datasets, both the teacher and student models achieved accuracy rates exceeding 97%. Across all datasets, the F1-scores were consistently above 0. 94, demonstrating the robustness and reliability of the proposed framework. Moreover, the student model's parameter count and model size are approximately 58. 1% of those of the teacher model, significantly reducing model complexity and storage requirements while maintaining high performance. These results highlight the potential of our proposed model for EEG-based epilepsy detection and establish a solid foundation for deploying lightweight models in resource-constrained settings.

YNIMG Journal 2022 Journal Article

Low-frequency oscillations link frontal and parietal cortex with subthalamic nucleus in conflicts

  • Quan Zhang
  • Baotian Zhao
  • Wolf-Julian Neumann
  • Hutao Xie
  • Lin Shi
  • Guanyu Zhu
  • Zixiao Yin
  • Guofan Qin

Low-frequency oscillations (LFOs, 28 Hz) in the subthalamic nucleus(STN) are known to reflect cognitive conflict. However, it is unclear if LFOs mediate communication and functional interactions among regions implicated in conflict processing, such as the motor cortex (M1), premotor cortex (PMC), and superior parietal lobule (SPL). To investigate the potential contribution of LFOs to cognitive conflict mediation, we recorded M1, PMC, and SPL activities by right subdural electrocorticography (ECoG) simultaneously with bilateral STN local field potentials (LFPs) by deep brain stimulation electrodes in 13 patients with Parkinson's disease who performed the arrow version of the Eriksen flanker task. Elevated cue-related LFO activity was observed across patients during task trials, with the earliest onset in PMC and SPL. At cue onset, LFO power exhibited a significantly greater increase or a trend of a greater increase in the PMC, M1, and STN, and less increase in the SPL during high-conflict (incongruent) trials than in low-conflict (congruent) trials. The local LFO power increases in PMC, SPL, and right STN were correlated with response time, supporting the notion that these structures are critical hubs for cognitive conflict processing. This power increase was accompanied by increased functional connectivity between the PMC and right STN, which was correlated with response time across subjects. Finally, ipsilateral PMC-STN Granger causality was enhanced during high-conflict trials, with direction from STN to PMC. Our study indicates that LFOs link the frontal and parietal cortex with STN during conflicts, and the ipsilateral PMC-STN connection is specifically involved in this cognitive conflict processing.

IJCAI Conference 2022 Conference Paper

MuiDial: Improving Dialogue Disentanglement with Intent-Based Mutual Learning

  • Ziyou Jiang
  • Lin Shi
  • Celia Chen
  • Fangwen Mu
  • Yumin Zhang
  • Qing Wang

The main goal of dialogue disentanglement is to separate the mixed utterances from a chat slice into independent dialogues. Existing models often utilize either an utterance-to-utterance (U2U) prediction to determine whether two utterances that have the “reply-to” relationship belong to one dialogue, or an utterance-to-thread (U2T) prediction to determine which dialogue-thread a given utterance should belong to. Inspired by mutual leaning, we propose MuiDial, a novel dialogue disentanglement model, to exploit the intent of each utterance and feed the intent to a mutual learning U2U-U2T disentanglement model. Experimental results and in-depth analysis on several benchmark datasets demonstrate the effectiveness and generalizability of our approach.

YNICL Journal 2022 Journal Article

Network impact score is an independent predictor of post-stroke cognitive impairment: A multicenter cohort study in 2341 patients with acute ischemic stroke

  • J. Matthijs Biesbroek
  • Nick A. Weaver
  • Hugo P. Aben
  • Hugo J. Kuijf
  • Jill Abrigo
  • Hee-Joon Bae
  • Mélanie Barbay
  • Jonathan G. Best

BACKGROUND: Post-stroke cognitive impairment (PSCI) is a common consequence of stroke. Accurate prediction of PSCI risk is challenging. The recently developed network impact score, which integrates information on infarct location and size with brain network topology, may improve PSCI risk prediction. AIMS: To determine if the network impact score is an independent predictor of PSCI, and of cognitive recovery or decline. METHODS: We pooled data from patients with acute ischemic stroke from 12 cohorts through the Meta VCI Map consortium. PSCI was defined as impairment in ≥ 1 cognitive domain on neuropsychological examination, or abnormal Montreal Cognitive Assessment. Cognitive recovery was defined as conversion from PSCI 24 months) and cognitive recovery or decline using logistic regression. Models were adjusted for age, sex, education, prior stroke, infarct volume, and study site. RESULTS: We included 2341 patients with 4657 cognitive assessments. PSCI was present in 398/844 patients (47%) 24 months. Cognitive recovery occurred in 64/181 (35%) patients and cognitive decline in 26/287 (9%). The network impact score predicted PSCI in the univariable (OR 1.50, 95%CI 1.34-1.68) and multivariable (OR 1.27, 95%CI 1.10-1.46) GEE model, with similar ORs in the logistic regression models for specified post-stroke intervals. The network impact score was not associated with cognitive recovery or decline. CONCLUSIONS: The network impact score is an independent predictor of PSCI. As such, the network impact score may contribute to a more precise and individualized cognitive prognostication in patients with ischemic stroke. Future studies should address if multimodal prediction models, combining the network impact score with demographics, clinical characteristics and other advanced brain imaging biomarkers, will provide accurate individualized prediction of PSCI. A tool for calculating the network impact score is freely available at https://metavcimap.org/features/software-tools/lsm-viewer/.

IJCAI Conference 2021 Conference Paper

Dialogue Disentanglement in Software Engineering: How Far are We?

  • Ziyou Jiang
  • Lin Shi
  • Celia Chen
  • Jun Hu
  • Qing Wang

Despite the valuable information contained in software chat messages, disentangling them into distinct conversations is an essential prerequisite for any in-depth analyses that utilize this information. To provide a better understanding of the current state-of-the-art, we evaluate five popular dialog disentanglement approaches on software-related chat. We find that existing approaches do not perform well on disentangling software-related dialogs that discuss technical and complex topics. Further investigation on how well the existing disentanglement measures reflect human satisfaction shows that existing measures cannot correctly indicate human satisfaction on disentanglement results. Therefore, in this paper, we introduce and evaluate a novel measure, named DLD. Using results of human satisfaction, we further summarize four most frequently appeared bad disentanglement cases on software-related chat to insight future improvements. These cases include (i) Ignoring Interaction Patterns, (ii) Ignoring Contextual Information, (iii) Mixing up Topics, and (iv) Ignoring User Relationships. We believe that our findings provide valuable insights on the effectiveness of existing dialog disentanglement approaches and these findings would promote a better application of dialog disentanglement in software engineering.

JBHI Journal 2021 Journal Article

LPAQR-Net: Efficient Vertebra Segmentation From Biplanar Whole-Spine Radiographs

  • Liping Zhang
  • Lin Shi
  • Jack Chun-Yiu Cheng
  • Winnie Chiu-Wing Chu
  • Simon Chun-Ho Yu

Vertebra segmentation from biplanar whole-spine radiographs is highly demanded in the quantitative assessment of scoliosis and the resultant sagittal deformities. However, automatic vertebra segmentation from the radiographs is extremely challenging due to the low contrast, blended boundaries, and superimposition of many layers, especially in the sagittal plane. To alleviate these problems, we propose a lightweight pyramid attention quick refinement network (LPAQR-Net) for efficient and accurate vertebra segmentation. The LPAQR-Net consists of three components: (1) a lightweight backbone network (LB-Net) to prune network parameters and memory footprints to strike an optimal balance between speed and accuracy, (2) a series of global attention refinement (GAR) modules to selectively reuse low-level features to facilitate the feature refinement, and (3) an attention-based atrous spatial pyramid pooling (A-ASPP) module to extract weighted pyramid contexts to improve the segmentation of blurred vertebrae. Moreover, the multi-class training strategy is employed to alleviate the over-segmentation of adjacent vertebrae. Evaluation results on both frontal and lateral radiographs of 332 AIS patients show our method achieves accurate vertebra segmentation with significant reductions in inference time and computational demands compared to the state-of-the-art. Meanwhile, results on the public AASCE2019 dataset also demonstrate the good generalization ability of our model. It is the first attempt to explore the lightweight network for vertebra segmentation from biplanar whole-spine radiographs. It simulates radiologists gathering nearby contexts for accurate and robust vertebra boundary inference. The method can provide efficient and accurate vertebra segmentation for clinicians to perform a fast and reproducible spinal deformity evaluation.

YNIMG Journal 2019 Journal Article

Neural evidence for long-term marriage shaping the functional brain network organization between couples

  • Lin Shi
  • Wutao Lou
  • Adrian Wong
  • Fan Zhang
  • Jill Abrigo
  • Winnie CW. Chu
  • Timothy CY. Kwok
  • Kelvin KL. Wong

Long-term married couples have been reported to share personality and behavioural similarities, but whether long-term marriage would shape the brain is hitherto unknown. In this study, 35 pairs of long-term married couples, who have married and living together at least 30 years, were recruited, and resting state functional magnetic resonance imaging was used to examine the neural correlates of long-term marriage between couples. Seven intrinsic connectivity networks were extracted using spatially constrained group independent component analysis, and the spatial similarity of each network as well as functional connectome similarity between couples were investigated respectively. The significant spatial similarities in the salience and frontoparietal networks as well as marginally significant connectome similarity were observed in long-term married couples. In addition, the marital duration showed a significantly positive correlation with the spatial similarity in the frontoparietal network and connectome similarity. The results provide objective evidence that long-term marriage would shape brain network organization, and the combination of initial personality traits and long-term common experience of the couples may be potential factors that account for similar brain network organizations between couples.

YNICL Journal 2019 Journal Article

Structural covariance in subcortical stroke patients measured by automated MRI-based volumetry

  • Caihong Wang
  • Lei Zhao
  • Yishan Luo
  • Jingchun Liu
  • Peifang Miao
  • Sen Wei
  • Lin Shi
  • Jingliang Cheng

A network-level investigation of the volumetric changes of subcortical stroke patients is still lacking. Here, we explored the alterations of structural covariance caused by subcortical stroke with automated brain volumetry. T1-weighed brain MRI scans were obtained from 63 normal controls (NC), 46 stroke patients with infarct in left internal capsule (CI_L), 33 stroke patients with infarct in right internal capsule (CI_R). We performed automatic anatomical segmentation of the T1-weighted brain images with AccuBrain. Volumetric structural covariance analyses were first performed within the basal ganglia structures that were both identified by voxel-based morphometry with AAL atlas and AccuBrain. Subsequently, we additionally included the infratentorial regions that were particularly quantified by AccuBrain for the structural covariance analyses and investigated the alterations of anatomical connections within these subcortical regions in CI_L and CI_R compared with NC. The association between the regional brain volumetry and motor function was also evaluated in stroke groups. There were significant and extensive volumetric differences in stroke patients. These significant regions were generally symmetric for CI_L and CI_R group depending on the side of stroke, involving both regions close to lesions and remote regions. The structural covariance analyses revealed the synergy volume alteration in subcortical regions both in CI_L and CI_R group. In addition, the alterations of volumetric structural covariance were more extensive in CI_L group than CI_R group. Moreover, we found that the subcortical regions with atrophy contributed to the deficits of motor function in CI_R group but not CI_L group, indicating a lesion-side effect of brain volumetric changes after stroke. These findings indicated that the chronic subcortical stroke patients have extensive disordered anatomical connections involving the whole-brain level network, and the connections patterns depend on the lesion-side.

YNIMG Journal 2017 Journal Article

Supervoxel-based statistical analysis of diffusion tensor imaging in schizotypal personality disorder

  • Teng Zhang
  • Defeng Wang
  • Qing Zhang
  • Jianlin Wu
  • Jian Lv
  • Lin Shi

To study white matter changes in schizotypal personality disorder (SPD), we developed a new statistical analysis method based on supervoxels for diffusion tensor imaging. Twenty patients with SPD and eighteen healthy controls were recruited from a pool of 3000 first-year university undergraduates, and underwent MRI using a 3T scanner. Diffusion tensors were first normalized into ICBM-152 space followed by a supervoxel segmentation based on graph clustering to segment white matter tensors into diffusion homogeneous supervoxels. Fractional anisotropy (FA) values in supervoxels were compared between SPD and healthy controls using permutation test. Suprathreshold cluster size test was used to correct multiple comparison. At last, fibers with significant differences were extracted from supervoxel clusters with significance level P < 0. 05. Results showed that FA values in genu of corpus callosum were significantly reduced (P = 0. 012) in patients with SPD (FA = 0. 565) compared with healthy controls (FA = 0. 593). In summary, this study proposed a novel supervoxel segmentation method for diffusion tensor imaging using graph-based clustering, and extended permutation test and suprathreshold cluster size test to supervoxels for detection of white matter changes.

YNIMG Journal 2016 Journal Article

Tractography atlas-based spatial statistics: Statistical analysis of diffusion tensor image along fiber pathways

  • Defeng Wang
  • Yishan Luo
  • Vincent C.T. Mok
  • Winnie C.W. Chu
  • Lin Shi

The quantitative analysis of diffusion tensor image (DTI) data has attracted increasing attention in recent decades for studying white matter (WM) integrity and development. Among the current DTI analysis methods, tract-based spatial statistics (TBSS), as a pioneering approach for the voxelwise analysis of DTI data, has gained a lot of popularity due to its user-friendly framework. However, in recent years, the reliability and interpretability of TBSS have been challenged by several works, and several improvements over the original TBSS pipeline have been suggested. In this paper, we propose a new DTI statistical analysis method, named tractography atlas-based spatial statistics (TABSS). It doesn't rely on the accurate alignment of fractional anisotropy (FA) images for population analysis and gets rid of the skeletonization procedures of TBSS, which have been indicated as the major sources of error. Furthermore, TABSS improves the interpretability of results by directly reporting the resulting statistics on WM tracts, waiving the need of a WM atlas in the interpretation of the results. The feasibility of TABSS was evaluated in an example study to show age-related FA alternation pattern of healthy human brain. Through this preliminary study, it is validated that TABSS can provide detailed statistical results in a comprehensive and easy-to-understand way.

YNIMG Journal 2012 Journal Article

Abnormal cerebral cortical thinning pattern in adolescent girls with idiopathic scoliosis

  • Defeng Wang
  • Lin Shi
  • Winnie C.W. Chu
  • R. Geoffrey Burwell
  • Jack C.Y. Cheng
  • Anil T. Ahuja

Adolescent idiopathic scoliosis (AIS) is a 3-D spinal deformity with uncertain etiology; abnormalities in brain development represent one of the possible explanatory concepts for its pathogenesis. The objective of this study is to investigate the brain maturation by thickness of cerebral cortex among female adolescents with and without idiopathic scoliosis. Fifty AIS patients with a typical right-thoracic curve pattern were compared with 40 age-matched healthy controls. Based on the T1-weighted magnetic resonance images, the thickness of cortical gray-matter was calculated using a well-validated surface measurement method. Focusing on adolescent participants within the age range with the frequent occurrences of AIS cases (i. e. , 12 to 17years), we observed that the cortical thickness declined significantly in almost all cortical lobes in normal subjects (Spearman correlation<−0. 4; P≤0. 05) except temporal lobe in LH, while in AIS patients this decline was weakly correlated with age (Spearman correlation>−0. 4) and largely insignificant (P≥0. 05). Quadratic regression results expressed the detailed difference in the age-related cortical changing pattern between the two groups. In addition, focal cortical thickness was significantly different in AIS patients compared with healthy controls in areas involved in motor and vestibular functions as well as object recognition. The findings from this study imply a different thinning pattern of the cerebral cortex during adolescence in patients with AIS; this may be primary (i. e. etiopathogenetic) or secondary (i. e. adaptation) to the development of scoliosis.

YNIMG Journal 2011 Journal Article

Automatic MRI segmentation and morphoanatomy analysis of the vestibular system in adolescent idiopathic scoliosis

  • Lin Shi
  • Defeng Wang
  • Winnie C.W. Chu
  • Geoffrey R. Burwell
  • Tien-Tsin Wong
  • Pheng Ann Heng
  • Jack C.Y. Cheng

The vestibular system is the sensory organ responsible for perceiving head rotational movements and maintaining postural balance of human body. The objectives of this study are to propose an innovative computational technique capable of automatically segmenting the vestibular system and to analyze its geometrical features from high resolution T2-weighted MR images. In this study, the proposed technique was used to test the hypothesis that the morphoanatomy of vestibular system in adolescent idiopathic scoliosis (AIS) patients is different from healthy control subjects. The findings could contribute significantly to the understanding of the etiopathogenesis of AIS. The segmentation pipeline consisted of extraction of region of interest, image pre-processing, K-means clustering, and surface smoothing. The geometry of this high-genus labyrinth structure was analyzed through automatic partition into genus-0 units and approximation using the best-fit circle and plane for each unit. The metrics of the best-fit planes and circles were taken as shape measures. The proposed technique was applied on a cohort of 20 right-thoracic AIS patients (mean age 14. 7years old) and 20 age-matched healthy girls. The intermediate results were validated by subjective scoring. The result showed that the distance between centers of lateral and superior canals and the angle with vertex at the center of posterior canal were significantly smaller in AIS than in healthy controls in the left-side vestibular system with p =0. 0264 and p =0. 0200 respectively, but not in the right-side counterparts. The detected morphoanatomical changes are likely to be associated with subclinical postural, vestibular and proprioceptive dysfunctions reported frequently in AIS. This study has demonstrated that the proposed method could be applied in MRI-based morphoanatomy studies of vestibular system clinically.

YNIMG Journal 2009 Journal Article

A comparison of morphometric techniques for studying the shape of the corpus callosum in adolescent idiopathic scoliosis

  • Defeng Wang
  • Lin Shi
  • Winnie C.W. Chu
  • Tomáš Paus
  • Jack C.Y. Cheng
  • Pheng Ann Heng

The purpose of this paper is to compare volume- and boundary-based morphometry methods by applying them in the statistical analysis of 2-D shapes. The methods discussed in the first category include voxel-, deformation-, and tensor-based morphometry. The active shape model is demonstrated as an example of the second category of methods. The test data are 2-D shapes of the corpus callosum (CC) obtained in patients with left-thoracic adolescent idiopathic scoliosis (AIS), as well as age and sex matched healthy participants. The features of both categories of methods and the complementarily of them are demonstrated, which may provide guidelines for their applications in medical-image analysis. The morphometric abnormality in the splenium of the CC cross-validated by different methods has potential value in the prognosis and curve prediction of the left-thoracic AIS.