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Kyongwon Kim

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JMLR Journal 2025 Journal Article

Learning causal graphs via nonlinear sufficient dimension reduction

Eftychia Solea
Bing Li
Kyongwon Kim

We introduce a new nonparametric methodology for estimating a directed acyclic graph (DAG) from observational data. Our method is nonparametric in nature: it does not impose any specific form on the joint distribution of the underlying DAG. Instead, it relies on a linear operator on reproducing kernel Hilbert spaces to evaluate conditional independence. However, a fully nonparametric approach would involve conditioning on a large number of random variables, subjecting it to the curse of dimensionality. To solve this problem, we apply nonlinear sufficient dimension reduction to reduce the number of variables before evaluating the conditional independence. We develop an estimator for the DAG, based on a linear operator that characterizes conditional independence, and establish the consistency and convergence rates of this estimator, as well as the uniform consistency of the estimated Markov equivalence class. We introduce a modified PC-algorithm to implement the estimating procedure efficiently such that the complexity depends on the sparseness of the underlying true DAG. We demonstrate the effectiveness of our methodology through simulations and a real data analysis. [abs] [ pdf ][ bib ] &copy JMLR 2025. ( edit, beta )

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JMLR Journal 2024 Journal Article

On Sufficient Graphical Models

Bing Li
Kyongwon Kim

We introduce a sufficient graphical model by applying the recently developed nonlinear sufficient dimension reduction techniques to the evaluation of conditional independence. The graphical model is nonparametric in nature, as it does not make distributional assumptions such as the Gaussian or copula Gaussian assumptions. However, unlike a fully nonparametric graphical model, which relies on the high-dimensional kernel to characterize conditional independence, our graphical model is based on conditional independence given a set of sufficient predictors with a substantially reduced dimension. In this way we avoid the curse of dimensionality that comes with a high-dimensional kernel. We develop the population-level properties, convergence rate, and variable selection consistency of our estimate. By simulation comparisons and an analysis of the DREAM 4 Challenge data set, we demonstrate that our method outperforms the existing methods when the Gaussian or copula Gaussian assumptions are violated, and its performance remains excellent in the high-dimensional setting. [abs] [ pdf ][ bib ] &copy JMLR 2024. ( edit, beta )

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