Author name cluster

Josef Sivic

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15 papers

2 author rows

ICLR Conference 2025 Conference Paper

6D Object Pose Tracking in Internet Videos for Robotic Manipulation

Georgy Ponimatkin
Martin Cífka
Tomás Soucek
Médéric Fourmy
Yann Labbé
Vladimír Petrík
Josef Sivic

We seek to extract a temporally consistent 6D pose trajectory of a manipulated object from an Internet instructional video. This is a challenging set-up for current 6D pose estimation methods due to uncontrolled capturing conditions, subtle but dynamic object motions, and the fact that the exact mesh of the manipulated object is not known. To address these challenges, we present the following contributions. First, we develop a new method that estimates the 6D pose of any object in the input image without prior knowledge of the object itself. The method proceeds by (i) retrieving a CAD model similar to the depicted object from a large-scale model database, (ii) 6D aligning the retrieved CAD model with the input image, and (iii) grounding the absolute scale of the object with respect to the scene. Second, we extract smooth 6D object trajectories from Internet videos by carefully tracking the detected objects across video frames. The extracted object trajectories are then retargeted via trajectory optimization into the configuration space of a robotic manipulator. Third, we thoroughly evaluate and ablate our 6D pose estimation method on YCB-V and HOPE-Video datasets as well as a new dataset of instructional videos manually annotated with approximate 6D object trajectories. We demonstrate significant improvements over existing state-of-the-art RGB 6D pose estimation methods. Finally, we show that the 6D object motion estimated from Internet videos can be transferred to a 7-axis robotic manipulator both in a virtual simulator as well as in a real world set-up. We also successfully apply our method to egocentric videos taken from the EPIC-KITCHENS dataset, demonstrating potential for Embodied AI applications.

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ICLR Conference 2025 Conference Paper

Learning to engineer protein flexibility

Petr Kouba
Joan Planas-Iglesias
Jirí Damborský
Jirí Sedlár
Stanislav Mazurenko
Josef Sivic

Generative machine learning models are increasingly being used to design novel proteins. However, their major limitation is the inability to account for protein flexibility, a property crucial for protein function. Learning to engineer flexibility is difficult because the relevant data is scarce, heterogeneous, and costly to obtain using computational and experimental methods. Our contributions are three-fold. First, we perform a comprehensive comparison of methods for evaluating protein flexibility and identify relevant data for learning. Second, we overcome the data scarcity issue by leveraging a pre-trained protein language model. We design and train flexibility predictors utilizing either only sequential or both sequential and structural information on the input. Third, we introduce a method for fine-tuning a protein inverse folding model to make it steerable toward desired flexibility at specified regions. We demonstrate that our method Flexpert enables guidance of inverse folding models toward increased flexibility. This opens up a transformative possibility of engineering protein flexibility.

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ICLR Conference 2024 Conference Paper

Learning to design protein-protein interactions with enhanced generalization

Anton Bushuiev
Roman Bushuiev
Petr Kouba
Anatolii Filkin
Marketa Gabrielova
Michal Gabriel
Jirí Sedlár
Tomás Pluskal

Discovering mutations enhancing protein-protein interactions (PPIs) is critical for advancing biomedical research and developing improved therapeutics. While machine learning approaches have substantially advanced the field, they often struggle to generalize beyond training data in practical scenarios. The contributions of this work are three-fold. First, we construct PPIRef, the largest and non-redundant dataset of 3D protein-protein interactions, enabling effective large-scale learning. Second, we leverage the PPIRef dataset to pre-train PPIformer, a new SE(3)-equivariant model generalizing across diverse protein-binder variants. We fine-tune PPIformer to predict effects of mutations on protein-protein interactions via a thermodynamically motivated adjustment of the pre-training loss function. Finally, we demonstrate the enhanced generalization of our new PPIformer approach by outperforming other state-of-the-art methods on new, non-leaking splits of standard labeled PPI mutational data and independent case studies optimizing a human antibody against SARS-CoV-2 and increasing the thrombolytic activity of staphylokinase.

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NeurIPS Conference 2024 Conference Paper

MassSpecGym: A benchmark for the discovery and identification of molecules

Roman Bushuiev
Anton Bushuiev
Niek F. de Jonge
Adamo Young
Fleming Kretschmer
Raman Samusevich
Janne Heirman
Fei Wang

The discovery and identification of molecules in biological and environmental samples is crucial for advancing biomedical and chemical sciences. Tandem mass spectrometry (MS/MS) is the leading technique for high-throughput elucidation of molecular structures. However, decoding a molecular structure from its mass spectrum is exceptionally challenging, even when performed by human experts. As a result, the vast majority of acquired MS/MS spectra remain uninterpreted, thereby limiting our understanding of the underlying (bio)chemical processes. Despite decades of progress in machine learning applications for predicting molecular structures from MS/MS spectra, the development of new methods is severely hindered by the lack of standard datasets and evaluation protocols. To address this problem, we propose MassSpecGym -- the first comprehensive benchmark for the discovery and identification of molecules from MS/MS data. Our benchmark comprises the largest publicly available collection of high-quality MS/MS spectra and defines three MS/MS annotation challenges: \textit{de novo} molecular structure generation, molecule retrieval, and spectrum simulation. It includes new evaluation metrics and a generalization-demanding data split, therefore standardizing the MS/MS annotation tasks and rendering the problem accessible to the broad machine learning community. MassSpecGym is publicly available at \url{https: //github. com/pluskal-lab/MassSpecGym}.

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ICRA Conference 2023 Conference Paper

Differentiable Collision Detection: a Randomized Smoothing Approach

Louis Montaut
Quentin Le Lidec
Antoine Bambade
Vladimír Petrík
Josef Sivic
Justin Carpentier

Collision detection is an important component of many robotics applications, from robot control to simulation, including motion planning and estimation. While the seminal works on the topic date back to the 80s, it is only recently that the question of properly differentiating collision detection has emerged as a central issue, thanks notably to the ongoing and various efforts made by the scientific community around the topic of differentiable physics. Yet, very few solutions have been suggested so far, and only with a strong assumption on the nature of the shapes involved. In this work, we introduce a generic and efficient approach to compute the derivatives of collision detection for any pair of convex shapes, by notably leveraging randomized smoothing techniques which have shown to be particularly adapted to capture the derivatives of non-smooth problems. This approach is implemented in the HPP-FCL and Pinocchio ecosystems, and evaluated on classic datasets and problems of the robotics literature, demonstrating few micro-second timings to compute informative derivatives directly exploitable by many real robotic applications, including differentiable simulation.

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ICRA Conference 2023 Conference Paper

Multi-Contact Task and Motion Planning Guided by Video Demonstration

Kateryna Zorina
David Kovár
Florent Lamiraux
Nicolas Mansard
Justin Carpentier
Josef Sivic
Vladimír Petrík

This work aims at leveraging instructional video to guide the solving of complex multi-contact task-and-motion planning tasks in robotics. Towards this goal, we propose an extension of the well-established Rapidly-Exploring Random Tree (RRT) planner, which simultaneously grows multiple trees around grasp and release states extracted from the guiding video. Our key novelty lies in combining contact states, and 3D object poses extracted from the guiding video with a traditional planning algorithm that allows us to solve tasks with sequential dependencies, for example, if an object needs to be placed at a specific location to be grasped later. To demonstrate the benefits of the proposed video-guided planning approach, we design a new benchmark with three challenging tasks: (i) 3D re-arrangement of multiple objects between a table and a shelf, (ii) multi-contact transfer of an object through a tunnel, and (iii) transferring objects using a tray in a similar way a waiter transfers dishes. We demonstrate the effectiveness of our planning algorithm on several robots, including the Franka Emika Panda and the KUKA KMR iiwa.

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NeurIPS Conference 2023 Conference Paper

POP-3D: Open-Vocabulary 3D Occupancy Prediction from Images

Antonin Vobecky
Oriane Siméoni
David Hurych
Spyridon Gidaris
Andrei Bursuc
Patrick Pérez
Josef Sivic

We describe an approach to predict open-vocabulary 3D semantic voxel occupancy map from input 2D images with the objective of enabling 3D grounding, segmentation and retrieval of free-form language queries. This is a challenging problem because of the 2D-3D ambiguity and the open-vocabulary nature of the target tasks, where obtaining annotated training data in 3D is difficult. The contributions of this work are three-fold. First, we design a new model architecture for open-vocabulary 3D semantic occupancy prediction. The architecture consists of a 2D-3D encoder together with occupancy prediction and 3D-language heads. The output is a dense voxel map of 3D grounded language embeddings enabling a range of open-vocabulary tasks. Second, we develop a tri-modal self-supervised learning algorithm that leverages three modalities: (i) images, (ii) language and (iii) LiDAR point clouds, and enables training the proposed architecture using a strong pre-trained vision-language model without the need for any 3D manual language annotations. Finally, we demonstrate quantitatively the strengths of the proposed model on several open-vocabulary tasks: Zero-shot 3D semantic segmentation using existing datasets; 3D grounding and retrieval of free-form language queries, using a small dataset that we propose as an extension of nuScenes. You can find the project page here https: //vobecant. github. io/POP3D.

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NeurIPS Conference 2023 Conference Paper

VidChapters-7M: Video Chapters at Scale

Antoine Yang
Arsha Nagrani
Ivan Laptev
Josef Sivic
Cordelia Schmid

Segmenting untrimmed videos into chapters enables users to quickly navigate to the information of their interest. This important topic has been understudied due to the lack of publicly released datasets. To address this issue, we present VidChapters-7M, a dataset of 817K user-chaptered videos including 7M chapters in total. VidChapters-7M is automatically created from videos online in a scalable manner by scraping user-annotated chapters and hence without any additional manual annotation. We introduce the following three tasks based on this data. First, the video chapter generation task consists of temporally segmenting the video and generating a chapter title for each segment. To further dissect the problem, we also define two variants of this task: video chapter generation given ground-truth boundaries, which requires generating a chapter title given an annotated video segment, and video chapter grounding, which requires temporally localizing a chapter given its annotated title. We benchmark both simple baselines as well as state-of-the-art video-language models on these three tasks. We also show that pretraining on VidChapters-7M transfers well to dense video captioning tasks, largely improving the state of the art on the YouCook2 and ViTT benchmarks. Finally, our experiments reveal that downstream performance scales well with the size of the pretraining dataset.

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IROS Conference 2022 Conference Paper

Learning Object Manipulation Skills from Video via Approximate Differentiable Physics

Vladimír Petrík
Mohammad Nomaan Qureshi
Josef Sivic
Makarand Tapaswi

We aim to teach robots to perform simple object manipulation tasks by watching a single video demonstration. Towards this goal, we propose an optimization approach that outputs a coarse and temporally evolving 3D scene to mimic the action demonstrated in the input video. Similar to previous work, a differentiable renderer ensures perceptual fidelity between the 3D scene and the 2D video. Our key novelty lies in the inclusion of a differentiable approach to solve a set of Ordinary Differential Equations (ODEs) that allows us to approximately model laws of physics such as gravity, friction, and hand-object or object-object interactions. This not only enables us to dramatically improve the quality of estimated hand and object states, but also produces physically admissible trajectories that can be directly translated to a robot without the need for costly reinforcement learning. We evaluate our approach on a 3D reconstruction task that consists of 54 video demonstrations sourced from 9 actions such as pull something from right to left or put something in front of something. Our approach improves over previous state-of-the-art by almost 30%, demonstrating superior quality on especially challenging actions involving physical interactions of two objects such as put something onto something. Finally, we showcase the learned skills on a Franka Emika Panda robot.

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NeurIPS Conference 2022 Conference Paper

Zero-Shot Video Question Answering via Frozen Bidirectional Language Models

Antoine Yang
Antoine Miech
Josef Sivic
Ivan Laptev
Cordelia Schmid

Video question answering (VideoQA) is a complex task that requires diverse multi-modal data for training. Manual annotation of question and answers for videos, however, is tedious and prohibits scalability. To tackle this problem, recent methods consider zero-shot settings with no manual annotation of visual question-answer. In particular, a promising approach adapts frozen autoregressive language models pretrained on Web-scale text-only data to multi-modal inputs. In contrast, we here build on frozen bidirectional language models (BiLM) and show that such an approach provides a stronger and cheaper alternative for zero-shot VideoQA. In particular, (i) we combine visual inputs with the frozen BiLM using light trainable modules, (ii) we train such modules using Web-scraped multi-modal data, and finally (iii) we perform zero-shot VideoQA inference through masked language modeling, where the masked text is the answer to a given question. Our proposed approach, FrozenBiLM, outperforms the state of the art in zero-shot VideoQA by a significant margin on a variety of datasets, including LSMDC-FiB, iVQA, MSRVTT-QA, MSVD-QA, ActivityNet-QA, TGIF-FrameQA, How2QA and TVQA. It also demonstrates competitive performance in the few-shot and fully-supervised setting. Our code and models are publicly available at https: //github. com/antoyang/FrozenBiLM.

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AAAI Conference 2021 Conference Paper

Artificial Dummies for Urban Dataset Augmentation

Antonín Vobecký
David Hurych
Michal Uřičář
Patrick Pérez
Josef Sivic

Existing datasets for training pedestrian detectors in images suffer from limited appearance and pose variation. The most challenging scenarios are rarely included because they are too difficult to capture due to safety reasons, or they are very unlikely to happen. The strict safety requirements in assisted and autonomous driving applications call for an extra high detection accuracy also in these rare situations. Having the ability to generate people images in arbitrary poses, with arbitrary appearances and embedded in different background scenes with varying illumination and weather conditions, is a crucial component for the development and testing of such applications. The contributions of this paper are three-fold. First, we describe an augmentation method for the controlled synthesis of urban scenes containing people, thus producing rare or never-seen situations. This is achieved with a data generator (called DummyNet) with disentangled control of the pose, the appearance, and the target background scene. Second, the proposed generator relies on novel network architecture and associated loss that takes into account the segmentation of the foreground person and its composition into the background scene. Finally, we demonstrate that the data generated by our DummyNet improve the performance of several existing person detectors across various datasets as well as in challenging situations, such as night-time conditions, where only a limited amount of training data is available. In the setup with only day-time data available, we improve the night-time detector by 17% log-average miss rate over the detector trained with the day-time data only.

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ICRA Conference 2020 Conference Paper

Learning to combine primitive skills: A step towards versatile robotic manipulation §

Robin Strudel
Alexander Pashevich
Igor Kalevatykh
Ivan Laptev
Josef Sivic
Cordelia Schmid

Manipulation tasks such as preparing a meal or assembling furniture remain highly challenging for robotics and vision. Traditional task and motion planning (TAMP) methods can solve complex tasks but require full state observability and are not adapted to dynamic scene changes. Recent learning methods can operate directly on visual inputs but typically require many demonstrations and/or task-specific reward engineering. In this work we aim to overcome previous limitations and propose a reinforcement learning (RL) approach to task planning that learns to combine primitive skills. First, compared to previous learning methods, our approach requires neither intermediate rewards nor complete task demonstrations during training. Second, we demonstrate the versatility of our vision-based task planning in challenging settings with temporary occlusions and dynamic scene changes. Third, we propose an efficient training of basic skills from few synthetic demonstrations by exploring recent CNN architectures and data augmentation. Notably, while all of our policies are learned on visual inputs in simulated environments, we demonstrate the successful transfer and high success rates when applying such policies to manipulation tasks on a real UR5 robotic arm.

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NeurIPS Conference 2018 Conference Paper

Neighbourhood Consensus Networks

Ignacio Rocco
Mircea Cimpoi
Relja Arandjelović
Akihiko Torii
Tomas Pajdla
Josef Sivic

We address the problem of finding reliable dense correspondences between a pair of images. This is a challenging task due to strong appearance differences between the corresponding scene elements and ambiguities generated by repetitive patterns. The contributions of this work are threefold. First, inspired by the classic idea of disambiguating feature matches using semi-local constraints, we develop an end-to-end trainable convolutional neural network architecture that identifies sets of spatially consistent matches by analyzing neighbourhood consensus patterns in the 4D space of all possible correspondences between a pair of images without the need for a global geometric model. Second, we demonstrate that the model can be trained effectively from weak supervision in the form of matching and non-matching image pairs without the need for costly manual annotation of point to point correspondences. Third, we show the proposed neighbourhood consensus network can be applied to a range of matching tasks including both category- and instance-level matching, obtaining the state-of-the-art results on the PF Pascal dataset and the InLoc indoor visual localization benchmark.

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NeurIPS Conference 2011 Conference Paper

Learning person-object interactions for action recognition in still images

Vincent Delaitre
Josef Sivic
Ivan Laptev

We investigate a discriminatively trained model of person-object interactions for recognizing common human actions in still images. We build on the locally order-less spatial pyramid bag-of-features model, which was shown to perform extremely well on a range of object, scene and human action recognition tasks. We introduce three principal contributions. First, we replace the standard quantized local HOG/SIFT features with stronger discriminatively trained body part and object detectors. Second, we introduce new person-object interaction features based on spatial co-occurrences of individual body parts and objects. Third, we address the combinatorial problem of a large number of possible interaction pairs and propose a discriminative selection procedure using a linear support vector machine (SVM) with a sparsity inducing regularizer. Learning of action-specific body part and object interactions bypasses the difficult problem of estimating the complete human body pose configuration. Benefits of the proposed model are shown on human action recognition in consumer photographs, outperforming the strong bag-of-features baseline.

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NeurIPS Conference 2009 Conference Paper

Segmenting Scenes by Matching Image Composites

Bryan Russell
Alyosha Efros
Josef Sivic
Bill Freeman
Andrew Zisserman

In this paper, we investigate how similar images sharing the same global description can help with unsupervised scene segmentation in an image. In contrast to recent work in semantic alignment of scenes, we allow an input image to be explained by partial matches of similar scenes. This allows for a better explanation of the input scenes. We perform MRF-based segmentation that optimizes over matches, while respecting boundary information. The recovered segments are then used to re-query a large database of images to retrieve better matches for the target region. We show improved performance in detecting occluding boundaries over previous methods on data gathered from the LabelMe database.

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