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Jonas Fischer

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7 papers

2 author rows

NeurIPS Conference 2025 Conference Paper

FaCT: Faithful Concept Traces for Explaining Neural Network Decisions

Amin Parchami-Araghi
Sukrut Rao
Jonas Fischer
Bernt Schiele

Deep networks have shown remarkable performance across a wide range of tasks, yet getting a global concept-level understanding of how they function remains a key challenge. Many post-hoc concept-based approaches have been introduced to understand their workings, yet they are not always faithful to the model. Further, they make restrictive assumptions on the concepts a model learns, such as class-specificity, small spatial extent, or alignment to human expectations. In this work, we put emphasis on the faithfulness of such concept-based explanations and propose a new model with model-inherent mechanistic concept-explanations. Our concepts are shared across classes and, from any layer, their contribution to the logit and their input-visualization can be faithfully traced. We also leverage foundation models to propose a new concept-consistency metric, C$^2$-Score, that can be used to evaluate concept-based methods. We show that, compared to prior work, our concepts are quantitatively more consistent and users find our concepts to be more interpretable, all while retaining competitive ImageNet performance.

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AAAI Conference 2024 Conference Paper

Finding Interpretable Class-Specific Patterns through Efficient Neural Search

Nils Philipp Walter
Jonas Fischer
Jilles Vreeken

Discovering patterns in data that best describe the differences between classes allows to hypothesize and reason about class-specific mechanisms. In molecular biology, for example, these bear the promise of advancing the understanding of cellular processes differing between tissues or diseases, which could lead to novel treatments. To be useful in practice, methods that tackle the problem of finding such differential patterns have to be readily interpretable by domain experts, and scalable to the extremely high-dimensional data. In this work, we propose a novel, inherently interpretable binary neural network architecture Diffnaps that extracts differential patterns from data. Diffnaps is scalable to hundreds of thousands of features and robust to noise, thus overcoming the limitations of current state-of-the-art methods in large-scale applications such as in biology. We show on synthetic and real world data, including three biological applications, that unlike its competitors, Diffnaps consistently yields accurate, succinct, and interpretable class descriptions.

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NeurIPS Conference 2024 Conference Paper

Pruning neural network models for gene regulatory dynamics using data and domain knowledge

Intekhab Hossain
Jonas Fischer
Rebekka Burkholz
John Quackenbush

The practical utility of machine learning models in the sciences often hinges on their interpretability. It is common to assess a model's merit for scientific discovery, and thus novel insights, by how well it aligns with already available domain knowledge - a dimension that is currently largely disregarded in the comparison of neural network models. While pruning can simplify deep neural network architectures and excels in identifying sparse models, as we show in the context of gene regulatory network inference, state-of-the-art techniques struggle with biologically meaningful structure learning. To address this issue, we propose DASH, a generalizable framework that guides network pruning by using domain-specific structural information in model fitting and leads to sparser, better interpretable models that are more robust to noise. Using both synthetic data with ground truth information, as well as real-world gene expression data, we show that DASH, using knowledge about gene interaction partners within the putative regulatory network, outperforms general pruning methods by a large margin and yields deeper insights into the biological systems being studied.

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ICLR Conference 2023 Conference Paper

Federated Learning from Small Datasets

Michael Kamp
Jonas Fischer
Jilles Vreeken

Federated learning allows multiple parties to collaboratively train a joint model without having to share any local data. It enables applications of machine learning in settings where data is inherently distributed and undisclosable, such as in the medical domain. Joint training is usually achieved by aggregating local models. When local datasets are small, locally trained models can vary greatly from a globally good model. Bad local models can arbitrarily deteriorate the aggregate model quality, causing federating learning to fail in these settings. We propose a novel approach that avoids this problem by interleaving model aggregation and permutation steps. During a permutation step we redistribute local models across clients through the server, while preserving data privacy, to allow each local model to train on a daisy chain of local datasets. This enables successful training in data-sparse domains. Combined with model aggregation, this approach enables effective learning even if the local datasets are extremely small, while retaining the privacy benefits of federated learning.

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ICML Conference 2022 Conference Paper

Label-Descriptive Patterns and Their Application to Characterizing Classification Errors

Michael A. Hedderich
Jonas Fischer
Dietrich Klakow
Jilles Vreeken

State-of-the-art deep learning methods achieve human-like performance on many tasks, but make errors nevertheless. Characterizing these errors in easily interpretable terms gives insight into whether a classifier is prone to making systematic errors, but also gives a way to act and improve the classifier. We propose to discover those feature-value combinations (i. e. , patterns) that strongly correlate with correct resp. erroneous predictions to obtain a global and interpretable description for arbitrary classifiers. We show this is an instance of the more general label description problem, which we formulate in terms of the Minimum Description Length principle. To discover a good pattern set, we develop the efficient Premise algorithm. Through an extensive set of experiments we show it performs very well in practice on both synthetic and real-world data. Unlike existing solutions, it ably recovers ground truth patterns, even on highly imbalanced data over many features. Through two case studies on Visual Question Answering and Named Entity Recognition, we confirm that Premise gives clear and actionable insight into the systematic errors made by modern NLP classifiers.

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ICLR Conference 2022 Conference Paper

Plant 'n' Seek: Can You Find the Winning Ticket?

Jonas Fischer
Rebekka Burkholz

The lottery ticket hypothesis has sparked the rapid development of pruning algorithms that aim to reduce the computational costs associated with deep learning during training and model deployment. Currently, such algorithms are primarily evaluated on imaging data, for which we lack ground truth information and thus the understanding of how sparse lottery tickets could be. To fill this gap, we develop a framework that allows us to plant and hide winning tickets with desirable properties in randomly initialized neural networks. To analyze the ability of state-of-the-art pruning to identify tickets of extreme sparsity, we design and hide such tickets solving four challenging tasks. In extensive experiments, we observe similar trends as in imaging studies, indicating that our framework can provide transferable insights into realistic problems. Additionally, we can now see beyond such relative trends and highlight limitations of current pruning methods. Based on our results, we conclude that the current limitations in ticket sparsity are likely of algorithmic rather than fundamental nature. We anticipate that comparisons to planted tickets will facilitate future developments of efficient pruning algorithms.

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ICML Conference 2021 Conference Paper

What's in the Box? Exploring the Inner Life of Neural Networks with Robust Rules

Jonas Fischer
Anna Oláh
Jilles Vreeken

We propose a novel method for exploring how neurons within neural networks interact. In particular, we consider activation values of a network for given data, and propose to mine noise-robust rules of the form X {\rightarrow} Y, where X and Y are sets of neurons in different layers. We identify the best set of rules by the Minimum Description Length Principle as the rules that together are most descriptive of the activation data. To learn good rule sets in practice, we propose the unsupervised ExplaiNN algorithm. Extensive evaluation shows that the patterns it discovers give clear insight in how networks perceive the world: they identify shared, respectively class-specific traits, compositionality within the network, as well as locality in convolutional layers. Moreover, these patterns are not only easily interpretable, but also supercharge prototyping as they identify which groups of neurons to consider in unison.

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