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Jerry Ma

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3 papers

2 author rows

AAAI Conference 2021 Conference Paper

On the Adequacy of Untuned Warmup for Adaptive Optimization

Jerry Ma
Denis Yarats

Adaptive optimization algorithms such as Adam are widely used in deep learning. The stability of such algorithms is often improved with a warmup schedule for the learning rate. Motivated by the difficulty of choosing and tuning warmup schedules, recent work proposes automatic variance rectification of Adam’s adaptive learning rate, claiming that this rectified approach (“RAdam”) surpasses the vanilla Adam algorithm and reduces the need for expensive tuning of Adam with warmup. In this work, we refute this analysis and provide an alternative explanation for the necessity of warmup based on the magnitude of the update term, which is of greater relevance to training stability. We then provide some “rule-ofthumb” warmup schedules, and we demonstrate that simple untuned warmup of Adam performs more-or-less identically to RAdam in typical practical settings. We conclude by suggesting that practitioners stick to linear warmup with Adam, with a sensible default being linear warmup over 2/(1 − β2) training iterations.

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ICLR Conference 2020 Conference Paper

Energy-based models for atomic-resolution protein conformations

Yilun Du
Joshua Meier
Jerry Ma
Rob Fergus
Alexander Rives

We propose an energy-based model (EBM) of protein conformations that operates at atomic scale. The model is trained solely on crystallized protein data. By contrast, existing approaches for scoring conformations use energy functions that incorporate knowledge of physical principles and features that are the complex product of several decades of research and tuning. To evaluate the model, we benchmark on the rotamer recovery task, the problem of predicting the conformation of a side chain from its context within a protein structure, which has been used to evaluate energy functions for protein design. The model achieves performance close to that of the Rosetta energy function, a state-of-the-art method widely used in protein structure prediction and design. An investigation of the model’s outputs and hidden representations finds that it captures physicochemical properties relevant to protein energy.

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ICML Conference 2019 Conference Paper

ELF OpenGo: an analysis and open reimplementation of AlphaZero

Yuandong Tian
Jerry Ma
Qucheng Gong
Shubho Sengupta
Zhuoyuan Chen
James Pinkerton
C. Lawrence Zitnick

The AlphaGo, AlphaGo Zero, and AlphaZero series of algorithms are remarkable demonstrations of deep reinforcement learning’s capabilities, achieving superhuman performance in the complex game of Go with progressively increasing autonomy. However, many obstacles remain in the understanding of and usability of these promising approaches by the research community. Toward elucidating unresolved mysteries and facilitating future research, we propose ELF OpenGo, an open-source reimplementation of the AlphaZero algorithm. ELF OpenGo is the first open-source Go AI to convincingly demonstrate superhuman performance with a perfect (20: 0) record against global top professionals. We apply ELF OpenGo to conduct extensive ablation studies, and to identify and analyze numerous interesting phenomena in both the model training and in the gameplay inference procedures. Our code, models, selfplay datasets, and auxiliary data are publicly available.

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