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Jennifer Sun

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3 papers

1 author row

NeurIPS Conference 2025 Conference Paper

Pre-trained Large Language Models Learn to Predict Hidden Markov Models In-context

Yijia Dai
Zhaolin Gao
Yahya Sattar
Sarah Dean
Jennifer Sun

Hidden Markov Models (HMMs) are fundamental tools for modeling sequential data with latent states that follow Markovian dynamics. However, they present significant challenges in model fitting and computational efficiency on real-world datasets. In this work, we demonstrate that pre-trained large language models (LLMs) can effectively model data generated by HMMs through in-context learning (ICL) — their ability to learn patterns from examples within the input context. We evaluate LLMs' performance on diverse synthetic HMMs, showing that their prediction accuracy converges to the theoretical optimum. We discover novel scaling trends influenced by HMM properties and provide theoretical conjectures for these empirical observations. Furthermore, we present practical guidelines for scientists on using ICL as a diagnostic tool for complex data. Applied to real-world animal decision-making tasks, ICL achieves competitive performance with models designed by human experts. Our results demonstrate potential for advancing understanding of LLMs' capabilities while opening new avenues for scientific discovery of biological mechanisms and hidden structures in real-world phenomena.

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NeurIPS Conference 2025 Conference Paper

Tracking and Understanding Object Transformations

Yihong Sun
Xinyu Yang
Jennifer Sun
Bharath Hariharan

Real-world objects frequently undergo state transformations. From an apple being cut into pieces to a butterfly emerging from its cocoon, tracking through these changes is important for understanding real-world objects and dynamics. However, existing methods often lose track of the target object after transformation, due to significant changes in object appearance. To address this limitation, we introduce the task of Track Any State: tracking objects through transformations while detecting and describing state changes, accompanied by a new benchmark dataset, VOST-TAS. To tackle this problem, we present TubeletGraph, a zero-shot system that recovers missing objects after transformation and maps out how object states are evolving over time. TubeletGraph first identifies potentially overlooked tracks, and determines whether they should be integrated based on semantic and proximity priors. Then, it reasons about the added tracks and generates a state graph describing each observed transformation. TubeletGraph achieves state-of-the-art tracking performance under transformations, while demonstrating deeper understanding of object transformations and promising capabilities in temporal grounding and semantic reasoning for complex object transformations. Code, additional results, and the benchmark dataset are available at https: //tubelet-graph. github. io.

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NeurIPS Conference 2020 Conference Paper

Learning Differentiable Programs with Admissible Neural Heuristics

Ameesh Shah
Eric Zhan
Jennifer Sun
Abhinav Verma
Yisong Yue
Swarat Chaudhuri

We study the problem of learning differentiable functions expressed as programs in a domain-specific language. Such programmatic models can offer benefits such as composability and interpretability; however, learning them requires optimizing over a combinatorial space of program "architectures". We frame this optimization problem as a search in a weighted graph whose paths encode top-down derivations of program syntax. Our key innovation is to view various classes of neural networks as continuous relaxations over the space of programs, which can then be used to complete any partial program. All the parameters of this relaxed program can be trained end-to-end, and the resulting training loss is an approximately admissible heuristic that can guide the combinatorial search. We instantiate our approach on top of the A* and Iterative Deepening Depth-First Search algorithms and use these algorithms to learn programmatic classifiers in three sequence classification tasks. Our experiments show that the algorithms outperform state-of-the-art methods for program learning, and that they discover programmatic classifiers that yield natural interpretations and achieve competitive accuracy.

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