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Jarret Ross

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6 papers

2 author rows

AAAI Conference 2026 Conference Paper

GP-MoLFormer-Sim: Test Time Molecular Optimization Through Contextual Similarity Guidance

Jiří Navrátil
Jarret Ross
Payel Das
Youssef Mroueh
Samuel C Hoffman
Vijil Chenthamarakshan
Brian Belgodere

The ability to design molecules while preserving similarity to a target molecule and/or property is crucial for various applications in drug discovery, chemical design, and biology. We introduce in this paper an efficient training-free method for navigating and sampling from the molecular space with a generative Chemical Language Model (CLM), while using the molecular similarity to the target as a guide. Our method leverages the contextual representations learned from the CLM itself to estimate the molecular similarity, which is then used to adjust the autoregressive sampling strategy of the CLM. At each step of the decoding process, the method tracks the distance of the current generations from the target and updates the logits to encourage the preservation of similarity in generations. We implement the method using a recently proposed ~47M parameter SMILES-based CLM, GP-MoLFormer, and therefore refer to the method as GP-MoLFormer-Sim, which enables a test-time update of the deep generative policy to reflect the contextual similarity to a set of guide molecules. The method is further integrated into a genetic algorithm (GA) and tested on a set of standard molecular optimization benchmarks involving property optimization, molecular rediscovery, and structure-based drug design. Results show that, GP-MoLFormer-Sim, combined with GA (GP-MoLFormer-Sim+GA) outperforms existing training-free baseline methods, when the oracle remains black-box. The findings in this work are a step forward in understanding and guiding the generative mechanisms of CLMs.

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NeurIPS Conference 2024 Conference Paper

Distributional Preference Alignment of LLMs via Optimal Transport

Igor Melnyk
Youssef Mroueh
Brian Belgodere
Mattia Rigotti
Apoorva Nitsure
Mikhail Yurochkin
Kristjan Greenewald
Jiri Navratil

Current LLM alignment techniques use pairwise human preferences at a sample level, and as such, they do not imply an alignment on the distributional level. We propose in this paper Alignment via Optimal Transport (AOT), a novel method for distributional preference alignment of LLMs. AOT aligns LLMs on unpaired preference data by making the reward distribution of the positive samples stochastically dominant in the first order on the distribution of negative samples. We introduce a convex relaxation of this first-order stochastic dominance and cast it as an optimal transport problem with a smooth and convex cost. Thanks to the one-dimensional nature of the resulting optimal transport problem and the convexity of the cost, it has a closed-form solution via sorting on empirical measures. We fine-tune LLMs with this AOT objective, which enables alignment by penalizing the violation of the stochastic dominance of the reward distribution of the positive samples on the reward distribution of the negative samples. We analyze the sample complexity of AOT by considering the dual of the OT problem and show that it converges at the parametric rate. Empirically, we show on a diverse set of alignment datasets and LLMs that AOT leads to state-of-the-art models in the 7B family of models when evaluated with Open LLM Benchmarks and AlpacaEval. Code for $\mathsf{AOT}$ is available in the Hugging Face TRL library \url{https: //ibm. biz/AOT_TRL}.

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ICML Conference 2024 Conference Paper

Risk Aware Benchmarking of Large Language Models

Apoorva Nitsure
Youssef Mroueh
Mattia Rigotti
Kristjan H. Greenewald
Brian Belgodere
Mikhail Yurochkin
Jirí Navrátil 0001
Igor Melnyk

We propose a distributional framework for benchmarking socio-technical risks of foundation models with quantified statistical significance. Our approach hinges on a new statistical relative testing based on first and second order stochastic dominance of real random variables. We show that the second order statistics in this test are linked to mean-risk models commonly used in econometrics and mathematical finance to balance risk and utility when choosing between alternatives. Using this framework, we formally develop a risk-aware approach for foundation model selection given guardrails quantified by specified metrics. Inspired by portfolio optimization and selection theory in mathematical finance, we define a metrics portfolio for each model as a means to aggregate a collection of metrics, and perform model selection based on the stochastic dominance of these portfolios. The statistical significance of our tests is backed theoretically by an asymptotic analysis via central limit theorems instantiated in practice via a bootstrap variance estimate. We use our framework to compare various large language models regarding risks related to drifting from instructions and outputting toxic content.

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JAIR Journal 2022 Journal Article

Image Captioning as an Assistive Technology: Lessons Learned from VizWiz 2020 Challenge

Pierre Dognin
Igor Melnyk
Youssef Mroueh
Inkit Padhi
Mattia Rigotti
Jarret Ross
Yair Schiff
Richard A. Young

Image captioning has recently demonstrated impressive progress largely owing to the introduction of neural network algorithms trained on curated dataset like MS-COCO. Often work in this field is motivated by the promise of deployment of captioning systems in practical applications. However, the scarcity of data and contexts in many competition datasets renders the utility of systems trained on these datasets limited as an assistive technology in real-world settings, such as helping visually impaired people navigate and accomplish everyday tasks. This gap motivated the introduction of the novel VizWiz dataset, which consists of images taken by the visually impaired and captions that have useful, task-oriented information. In an attempt to help the machine learning computer vision field realize its promise of producing technologies that have positive social impact, the curators of the VizWiz dataset host several competitions, including one for image captioning. This work details the theory and engineering from our winning submission to the 2020 captioning competition. Our work provides a step towards improved assistive image captioning systems. This article appears in the special track on AI & Society.

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AAAI Conference 2021 Conference Paper

Improved Mutual Information Estimation

Youssef Mroueh
Igor Melnyk
Pierre Dognin
Jarret Ross
Tom Sercu

We propose to estimate the KL divergence using a relaxed likelihood ratio estimation in a Reproducing Kernel Hilbert space. We show that the dual of our ratio estimator for KL in the particular case of Mutual Information estimation corresponds to a lower bound on the MI that is related to the so called Donsker Varadhan lower bound. In this dual form, MI is estimated via learning a witness function discriminating between the joint density and the product of marginal, as well as an auxiliary scalar variable that enforces a normalization constraint on the likelihood ratio. By extending the function space to neural networks, we propose an efficient neural MI estimator, and validate its performance on synthetic examples, showing advantage over the existing baselines. We demonstrate its strength in large-scale self-supervised representation learning through MI maximization.

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NeurIPS Conference 2020 Conference Paper

A Decentralized Parallel Algorithm for Training Generative Adversarial Nets

Mingrui Liu
Wei Zhang
Youssef Mroueh
Xiaodong Cui
Jarret Ross
Tianbao Yang
Payel Das

Generative Adversarial Networks (GANs) are a powerful class of generative models in the deep learning community. Current practice on large-scale GAN training utilizes large models and distributed large-batch training strategies, and is implemented on deep learning frameworks (e. g. , TensorFlow, PyTorch, etc. ) designed in a centralized manner. In the centralized network topology, every worker needs to either directly communicate with the central node or indirectly communicate with all other workers in every iteration. However, when the network bandwidth is low or network latency is high, the performance would be significantly degraded. Despite recent progress on decentralized algorithms for training deep neural networks, it remains unclear whether it is possible to train GANs in a decentralized manner. The main difficulty lies at handling the nonconvex-nonconcave min-max optimization and the decentralized communication simultaneously. In this paper, we address this difficulty by designing the \textbf{first gradient-based decentralized parallel algorithm} which allows workers to have multiple rounds of communications in one iteration and to update the discriminator and generator simultaneously, and this design makes it amenable for the convergence analysis of the proposed decentralized algorithm. Theoretically, our proposed decentralized algorithm is able to solve a class of non-convex non-concave min-max problems with provable non-asymptotic convergence to first-order stationary point. Experimental results on GANs demonstrate the effectiveness of the proposed algorithm.

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