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Ivan Dokmanic

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7 papers

2 author rows

ICLR Conference 2025 Conference Paper

Joint Graph Rewiring and Feature Denoising via Spectral Resonance

Jonas Linkerhägner
Cheng Shi
Ivan Dokmanic

When learning from graph data, the graph and the node features both give noisy information about the node labels. In this paper we propose an algorithm to **j**ointly **d**enoise the features and **r**ewire the graph (JDR), which improves the performance of downstream node classification graph neural nets (GNNs). JDR works by aligning the leading spectral spaces of graph and feature matrices. It approximately solves the associated non-convex optimization problem in a way that handles graphs with multiple classes and different levels of homophily or heterophily. We theoretically justify JDR in a stylized setting and show that it consistently outperforms existing rewiring methods on a wide range of synthetic and real-world node classification tasks.

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AAAI Conference 2024 Conference Paper

A Graph Dynamics Prior for Relational Inference

Liming Pan
Cheng Shi
Ivan Dokmanic

Relational inference aims to identify interactions between parts of a dynamical system from the observed dynamics. Current state-of-the-art methods fit the dynamics with a graph neural network (GNN) on a learnable graph. They use one-step message-passing GNNs---intuitively the right choice since non-locality of multi-step or spectral GNNs may confuse direct and indirect interactions. But the effective interaction graph depends on the sampling rate and it is rarely localized to direct neighbors, leading to poor local optima for the one-step model. In this work, we propose a graph dynamics prior (GDP) for relational inference. GDP constructively uses error amplification in non-local polynomial filters to steer the solution to the ground-truth graph. To deal with non-uniqueness, GDP simultaneously fits a ``shallow'' one-step model and a polynomial multi-step model with shared graph topology. Experiments show that GDP reconstructs graphs far more accurately than earlier methods, with remarkable robustness to under-sampling. Since appropriate sampling rates for unknown dynamical systems are not known a priori, this robustness makes GDP suitable for real applications in scientific machine learning. Reproducible code is available at https://github.com/DaDaCheng/GDP.

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ICLR Conference 2023 Conference Paper

FunkNN: Neural Interpolation for Functional Generation

AmirEhsan Khorashadizadeh
Anadi Chaman
Valentin Debarnot
Ivan Dokmanic

Can we build continuous generative models which generalize across scales, can be evaluated at any coordinate, admit calculation of exact derivatives, and are conceptually simple? Existing MLP-based architectures generate worse samples than the grid-based generators with favorable convolutional inductive biases. Models that focus on generating images at different scales do better, but employ complex architectures not designed for continuous evaluation of images and derivatives. We take a signal-processing perspective and treat continuous signal generation as interpolation from samples. Indeed, correctly sampled discrete images contain all information about the low spatial frequencies. The question is then how to extrapolate the spectrum in a data-driven way while meeting the above design criteria. Our answer is FunkNN---a novel convolutional network which learns how to reconstruct continuous images at arbitrary coordinates and can be applied to any image dataset. Combined with a discrete generative model it becomes a functional generator which can act as a prior in continuous ill-posed inverse problems. We show that FunkNN generates high-quality continuous images and exhibits strong out-of-distribution performance thanks to its patch-based design. We further showcase its performance in several stylized inverse problems with exact spatial derivatives.

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ICLR Conference 2022 Conference Paper

Neural Link Prediction with Walk Pooling

Liming Pan
Cheng Shi
Ivan Dokmanic

Graph neural networks achieve high accuracy in link prediction by jointly leveraging graph topology and node attributes. Topology, however, is represented indirectly; state-of-the-art methods based on subgraph classification label nodes with distance to the target link, so that, although topological information is present, it is tempered by pooling. This makes it challenging to leverage features like loops and motifs associated with network formation mechanisms. We propose a link prediction algorithm based on a new pooling scheme called WalkPool. WalkPool combines the expressivity of topological heuristics with the feature-learning ability of neural networks. It summarizes a putative link by random walk probabilities of adjacent paths. Instead of extracting transition probabilities from the original graph, it computes the transition matrix of a ``predictive'' latent graph by applying attention to learned features; this may be interpreted as feature-sensitive topology fingerprinting. WalkPool can leverage unsupervised node features or be combined with GNNs and trained end-to-end. It outperforms state-of-the-art methods on all common link prediction benchmarks, both homophilic and heterophilic, with and without node attributes. Applying WalkPool to a set of unsupervised GNNs significantly improves prediction accuracy, suggesting that it may be used as a general-purpose graph pooling scheme.

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ICLR Conference 2022 Conference Paper

Universal Approximation Under Constraints is Possible with Transformers

Anastasis Kratsios
Behnoosh Zamanlooy
Tianlin Liu
Ivan Dokmanic

Many practical problems need the output of a machine learning model to satisfy a set of constraints, $K$. Nevertheless, there is no known guarantee that classical neural network architectures can exactly encode constraints while simultaneously achieving universality. We provide a quantitative constrained universal approximation theorem which guarantees that for any non-convex compact set $K$ and any continuous function $f:\mathbb{R}^n\rightarrow K$, there is a probabilistic transformer $\hat{F}$ whose randomized outputs all lie in $K$ and whose expected output uniformly approximates $f$. Our second main result is a ``deep neural version'' of Berge's Maximum Theorem (1963). The result guarantees that given an objective function $L$, a constraint set $K$, and a family of soft constraint sets, there is a probabilistic transformer $\hat{F}$ that approximately minimizes $L$ and whose outputs belong to $K$; moreover, $\hat{F}$ approximately satisfies the soft constraints. Our results imply the first universal approximation theorem for classical transformers with exact convex constraint satisfaction. They also yield that a chart-free universal approximation theorem for Riemannian manifold-valued functions subject to suitable geodesically convex constraints.

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ICML Conference 2022 Conference Paper

Universal Joint Approximation of Manifolds and Densities by Simple Injective Flows

Michael Puthawala
Matti Lassas
Ivan Dokmanic
Maarten V. de Hoop

We study approximation of probability measures supported on n-dimensional manifolds embedded in R^m by injective flows—neural networks composed of invertible flows and injective layers. We show that in general, injective flows between R^n and R^m universally approximate measures supported on images of extendable embeddings, which are a subset of standard embeddings: when the embedding dimension m is small, topological obstructions may preclude certain manifolds as admissible targets. When the embedding dimension is sufficiently large, m >= 3n+1, we use an argument from algebraic topology known as the clean trick to prove that the topological obstructions vanish and injective flows universally approximate any differentiable embedding. Along the way we show that the studied injective flows admit efficient projections on the range, and that their optimality can be established "in reverse, " resolving a conjecture made in Brehmer & Cranmer 2020.

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UAI Conference 2021 Conference Paper

Trumpets: Injective flows for inference and inverse problems

Konik Kothari
AmirEhsan Khorashadizadeh
Maarten V. de Hoop
Ivan Dokmanic

We propose injective generative models called Trumpets that generalize invertible normalizing flows. The proposed generators progressively increase dimension from a low-dimensional latent space. We demonstrate that Trumpets can be trained orders of magnitudes faster than standard flows while yielding samples of comparable or better quality. They retain many of the advantages of the standard flows such as training based on maximum likelihood and a fast, exact inverse of the generator. Since Trumpets are injective and have fast inverses, they can be effectively used for downstream Bayesian inference. To wit, we use Trumpet priors for maximum a posteriori estimation in the context of image reconstruction from compressive measurements, outperforming competitive baselines in terms of reconstruction quality and speed. We then propose an efficient method for posterior characterization and uncertainty quantification with Trumpets by taking advantage of the low-dimensional latent space

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