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Hongjun Jia

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5 papers

1 author row

YNIMG Journal 2012 Journal Article

A novel framework for longitudinal atlas construction with groupwise registration of subject image sequences

Shu Liao
Hongjun Jia
Guorong Wu
Dinggang Shen
The Alzheimer's Disease Neuroimaging Initiative

Longitudinal atlas construction plays an important role in medical image analysis. Given a set of longitudinal images from different subjects, the task of longitudinal atlas construction is to build an atlas sequence which can represent the trend of anatomical changes of the population. The major challenge for longitudinal atlas construction is how to effectively incorporate both the subject-specific information and population information to build the unbiased atlases. In this paper, a novel groupwise longitudinal atlas construction framework is proposed to address this challenge, and the main contributions of the proposed framework lie in the following aspects: (1) The subject-specific longitudinal information is captured by building the growth model for each subject. (2) The longitudinal atlas sequence is constructed by performing groupwise registration among all the subject image sequences, and only one transformation is needed to transform each subject's image sequence to the atlas space. The constructed longitudinal atlases are unbiased and no explicit template is assumed. (3) The proposed method is general, where the number of longitudinal images of each subject and the time points at which they are taken can be different. The proposed method is extensively evaluated on two longitudinal databases, namely the BLSA and ADNI databases, to construct the longitudinal atlas sequence. It is also compared with a state-of-the-art longitudinal atlas construction algorithm based on kernel regression on the temporal domain. Experimental results demonstrate that the proposed method consistently achieves higher registration accuracies and more consistent spatial–temporal correspondences than the compared method on both databases.

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YNIMG Journal 2012 Journal Article

Iterative multi-atlas-based multi-image segmentation with tree-based registration

Hongjun Jia
Pew-Thian Yap
Dinggang Shen

In this paper, we present a multi-atlas-based framework for accurate, consistent and simultaneous segmentation of a group of target images. Multi-atlas-based segmentation algorithms consider concurrently complementary information from multiple atlases to produce optimal segmentation outcomes. However, the accuracy of these algorithms relies heavily on the precise alignment of the atlases with the target image. In particular, the commonly used pairwise registration may result in inaccurate alignment especially between images with large shape differences. Additionally, when segmenting a group of target images, most current methods consider these images independently with disregard of their correlation, thus resulting in inconsistent segmentations of the same structures across different target images. We propose two novel strategies to address these limitations: 1) a novel tree-based groupwise registration method for concurrent alignment of both the atlases and the target images, and 2) an iterative groupwise segmentation method for simultaneous consideration of segmentation information propagated from all available images, including the atlases and other newly segmented target images. Evaluation based on various datasets indicates that the proposed multi-atlas-based multi-image segmentation (MABMIS) framework yields substantial improvements in terms of consistency and accuracy over methods that do not consider the group of target images holistically.

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YNIMG Journal 2011 Journal Article

Intermediate templates guided groupwise registration of diffusion tensor images

Hongjun Jia
Pew-Thian Yap
Guorong Wu
Qian Wang
Dinggang Shen

Registration of a population of diffusion tensor images (DTIs) is one of the key steps in medical image analysis, and it plays an important role in the statistical analysis of white matter related neurological diseases. However, pairwise registration with respect to a pre-selected template may not give precise results if the selected template deviates significantly from the distribution of images. To cater for more accurate and consistent registration, a novel framework is proposed for groupwise registration with the guidance from one or more intermediate templates determined from the population of images. Specifically, we first use a Euclidean distance, defined as a combinative measure based on the FA map and ADC map, for gauging the similarity of each pair of DTIs. A fully connected graph is then built with each node denoting an image and each edge denoting the distance between a pair of images. The root template image is determined automatically as the image with the overall shortest path length to all other images on the minimum spanning tree (MST) of the graph. Finally, a sequence of registration steps is applied to progressively warping each image towards the root template image with the help of intermediate templates distributed along its path to the root node on the MST. Extensive experimental results using diffusion tensor images of real subjects indicate that registration accuracy and fiber tract alignment are significantly improved, compared with the direct registration from each image to the root template image.

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YNIMG Journal 2011 Journal Article

SharpMean: Groupwise registration guided by sharp mean image and tree-based registration

Guorong Wu
Hongjun Jia
Qian Wang
Dinggang Shen

Groupwise registration has become more and more popular due to its attractiveness for unbiased analysis of population data. One of the most popular approaches for groupwise registration is to iteratively calculate the group mean image and then register all subject images towards the latest estimated group mean image. However, its performance might be undermined by the fuzzy mean image estimated in the very beginning of groupwise registration procedure, because all subject images are far from being well-aligned at that moment. In this paper, we first point out the significance of always keeping the group mean image sharp and clear throughout the entire groupwise registration procedure, which is intuitively important but has not been explored in the literature yet. To achieve this, we resort to developing the robust mean-image estimator by the adaptive weighting strategy, where the weights are adaptive across not only the individual subject images but also all spatial locations in the image domain. On the other hand, we notice that some subjects might have large anatomical variations from the group mean image, which challenges most of the state-of-the-art registration algorithms. To ensure good registration results in each iteration, we explore the manifold of subject images and build a minimal spanning tree (MST) with the group mean image as the root of the MST. Therefore, each subject image is only registered to its parent node often with similar shapes, and its overall transformation to the group mean image space is obtained by concatenating all deformations along the paths connecting itself to the root of the MST (the group mean image). As a result, all the subjects will be well aligned to the group mean image adaptively. Our method has been evaluated in both real and simulated datasets. In all experiments, our method outperforms the conventional algorithm which generally produces a fuzzy group mean image throughout the entire groupwise registration.

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YNIMG Journal 2010 Journal Article

ABSORB: Atlas building by self-organized registration and bundling

Hongjun Jia
Guorong Wu
Qian Wang
Dinggang Shen

To achieve more accurate and consistent registration in an image population, a novel hierarchical groupwise registration framework, called Atlas Building by Self-Organized Registration and Bundling (ABSORB), is proposed in this paper. In this new framework, the global structure, i. e. , the relative distribution of subject images is always preserved during the registration process by constraining each subject image to deform only locally with respect to its neighbors within the learned image manifold. To achieve this goal, two novel strategies, i. e. , the self-organized registration by warping one image towards a set of its eligible neighbors and image bundling to cluster similar images, are specially proposed. By using these two strategies, this new framework can perform groupwise registration in a hierarchical way. Specifically, in the high level, it will perform on a much smaller dataset formed by the representative subject images of all subgroups that are generated in the previous levels of registration. Compared to the other groupwise registration methods, our proposed framework has several advantages: (1) it explores the local data distribution and uses the obtained distribution information to guide the registration; (2) the possible registration error can be greatly reduced by requiring each individual subject to move only towards its nearby subjects with similar structures; (3) it can produce a smoother registration path, in general, from each subject image to the final built atlas than other groupwise registration methods. Experimental results on both synthetic and real datasets show that the proposed framework can achieve substantial improvements, compared to the other two widely used groupwise registration methods, in terms of both registration accuracy and robustness.

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