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Emad Bahrami

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AAAI Conference 2025 Conference Paper

Hierarchical Vector Quantization for Unsupervised Action Segmentation

  • Federico Spurio
  • Emad Bahrami
  • Gianpiero Francesca
  • Juergen Gall

In this work, we address unsupervised temporal action segmentation, which segments a set of long, untrimmed videos into semantically meaningful segments that are consistent across videos. While recent approaches combine representation learning and clustering in a single step for this task, they do not cope with large variations within temporal segments of the same class. To address this limitation, we propose a novel method, termed Hierarchical Vector Quantization (HVQ), that consists of two subsequent vector quantization modules. This results in a hierarchical clustering where the additional subclusters cover the variations within a cluster. We demonstrate that our approach captures the distribution of segment lengths much better than the state of the art. To this end, we introduce a new metric based on the Jensen-Shannon Distance (JSD) for unsupervised temporal action segmentation. We evaluate our approach on three public datasets, namely Breakfast, YouTube Instructional and IKEA ASM. Our approach outperforms the state of the art in terms of F1 score, recall and JSD.

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YNIMG Journal 2022 Journal Article

CerebNet: A fast and reliable deep-learning pipeline for detailed cerebellum sub-segmentation

  • Jennifer Faber
  • David Kügler
  • Emad Bahrami
  • Lea-Sophie Heinz
  • Dagmar Timmann
  • Thomas M. Ernst
  • Katerina Deike-Hofmann
  • Thomas Klockgether

Quantifying the volume of the cerebellum and its lobes is of profound interest in various neurodegenerative and acquired diseases. Especially for the most common spinocerebellar ataxias (SCA), for which the first antisense oligonculeotide-base gene silencing trial has recently started, there is an urgent need for quantitative, sensitive imaging markers at pre-symptomatic stages for stratification and treatment assessment. This work introduces CerebNet, a fully automated, extensively validated, deep learning method for the lobular segmentation of the cerebellum, including the separation of gray and white matter. For training, validation, and testing, T1-weighted images from 30 participants were manually annotated into cerebellar lobules and vermal sub-segments, as well as cerebellar white matter. CerebNet combines FastSurferCNN, a UNet-based 2.5D segmentation network, with extensive data augmentation, e.g. realistic non-linear deformations to increase the anatomical variety, eliminating additional preprocessing steps, such as spatial normalization or bias field correction. CerebNet demonstrates a high accuracy (on average 0.87 Dice and 1.742mm Robust Hausdorff Distance across all structures) outperforming state-of-the-art approaches. Furthermore, it shows high test-retest reliability (average ICC >0.97 on OASIS and Kirby) as well as high sensitivity to disease effects, including the pre-ataxic stage of spinocerebellar ataxia type 3 (SCA3). CerebNet is compatible with FreeSurfer and FastSurfer and can analyze a 3D volume within seconds on a consumer GPU in an end-to-end fashion, thus providing an efficient and validated solution for assessing cerebellum sub-structure volumes. We make CerebNet available as source-code (https://github.com/Deep-MI/FastSurfer).

Details DOI
v2026.09.13