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Eli Sennesh

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4 papers

2 author rows

NeurIPS Conference 2024 Conference Paper

Divide-and-Conquer Predictive Coding: a structured Bayesian inference algorithm

Eli Sennesh
Hao Wu
Tommaso Salvatori

Unexpected stimuli induce "error" or "surprise" signals in the brain. The theory of predictive coding promises to explain these observations in terms of Bayesian inference by suggesting that the cortex implements variational inference in a probabilistic graphical model. However, when applied to machine learning tasks, this family of algorithms has yet to perform on par with other variational approaches in high-dimensional, structured inference problems. To address this, we introduce a novel predictive coding algorithm for structured generative models, that we call divide-and-conquer predictive coding (DCPC); it differs from other formulations of predictive coding, as it respects the correlation structure of the generative model and provably performs maximum-likelihood updates of model parameters, all without sacrificing biological plausibility. Empirically, DCPC achieves better numerical performance than competing algorithms and provides accurate inference in a number of problems not previously addressed with predictive coding. We provide an open implementation of DCPC in Pyro on Github.

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UAI Conference 2021 Conference Paper

Learning proposals for probabilistic programs with inference combinators

Sam Stites
Heiko Zimmermann
Hao Wu 0020
Eli Sennesh
Jan-Willem van de Meent

We develop operators for construction of proposals in probabilistic programs, which we refer to as inference combinators. Inference combinators define a grammar over importance samplers that compose primitive operations such as application of a transition kernel and importance resampling. Proposals in these samplers can be parameterized using neural networks, which in turn can be trained by optimizing variational objectives. The result is a framework for user-programmable variational methods that are correct by construction and can be tailored to specific models. We demonstrate the flexibility of this framework by implementing advanced variational methods based on amortized Gibbs sampling and annealing.

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ICML Conference 2020 Conference Paper

Amortized Population Gibbs Samplers with Neural Sufficient Statistics

Hao Wu 0020
Heiko Zimmermann
Eli Sennesh
Tuan Anh Le 0001
Jan-Willem van de Meent

We develop amortized population Gibbs (APG) samplers, a class of scalable methods that frame structured variational inference as adaptive importance sampling. APG samplers construct high-dimensional proposals by iterating over updates to lower-dimensional blocks of variables. We train each conditional proposal by minimizing the inclusive KL divergence with respect to the conditional posterior. To appropriately account for the size of the input data, we develop a new parameterization in terms of neural sufficient statistics. Experiments show that APG samplers can be used to train highly-structured deep generative models in an unsupervised manner, and achieve substantial improvements in inference accuracy relative to standard autoencoding variational methods.

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NeurIPS Conference 2020 Conference Paper

Neural Topographic Factor Analysis for fMRI Data

Eli Sennesh
Zulqarnain Khan
Yiyu Wang
J Benjamin Hutchinson
Ajay Satpute
Jennifer Dy
Jan-Willem van de Meent

Neuroimaging studies produce gigabytes of spatio-temporal data for a small number of participants and stimuli. Recent work increasingly suggests that the common practice of averaging across participants and stimuli leaves out systematic and meaningful information. We propose Neural Topographic Factor Analysis (NTFA), a probabilistic factor analysis model that infers embeddings for participants and stimuli. These embeddings allow us to reason about differences between participants and stimuli as signal rather than noise. We evaluate NTFA on data from an in-house pilot experiment, as well as two publicly available datasets. We demonstrate that inferring representations for participants and stimuli improves predictive generalization to unseen data when compared to previous topographic methods. We also demonstrate that the inferred latent factor representations are useful for downstream tasks such as multivoxel pattern analysis and functional connectivity.

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