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Dustin Scheinost

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35 papers

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YNIMG Journal 2022 Journal Article

A cognitive state transformation model for task-general and task-specific subsystems of the brain connectome

Kwangsun Yoo
Monica D Rosenberg
Young Hye Kwon
Dustin Scheinost
R Todd Constable
Marvin M Chun

The human brain flexibly controls different cognitive behaviors, such as memory and attention, to satisfy contextual demands. Much progress has been made to reveal task-induced modulations in the whole-brain functional connectome, but we still lack a way to model context-dependent changes. Here, we present a novel connectome-to-connectome (C2C) transformation framework that enables us to model the brain's functional reorganization from one connectome state to another in response to specific task goals. Using functional magnetic resonance imaging data from the Human Connectome Project, we demonstrate that the C2C model accurately generates an individual's task-related connectomes from their task-free (resting-state) connectome with a high degree of specificity across seven different cognitive states. Moreover, the C2C model amplifies behaviorally relevant individual differences in the task-free connectome, thereby improving behavioral predictions with increased power, achieving similar performance with just a third of the subjects needed when relying on resting-state data alone. Finally, the C2C model reveals how the brain reorganizes between cognitive states. Our observations support the existence of reliable state-specific subsystems in the brain and demonstrate that we can quantitatively model how the connectome reconfigures to different cognitive states, enabling more accurate predictions of behavior with fewer subjects.

YNIMG Journal 2022 Journal Article

Arousal impacts distributed hubs modulating the integration of brain functional connectivity

Kangjoo Lee
Corey Horien
David O'Connor
Bronwen Garand-Sheridan
Fuyuze Tokoglu
Dustin Scheinost
Evelyn M.R. Lake
R. Todd Constable

Even when subjects are at rest, it is thought that brain activity is organized into distinct brain states during which reproducible patterns are observable. Yet, it is unclear how to define or distinguish different brain states. A potential source of brain state variation is arousal, which may play a role in modulating functional interactions between brain regions. Here, we use simultaneous resting state functional magnetic resonance imaging (fMRI) and pupillometry to study the impact of arousal levels indexed by pupil area on the integration of large-scale brain networks. We employ a novel sparse dictionary learning-based method to identify hub regions participating in between-network integration stratified by arousal, by measuring k-hubness, the number (k) of functionally overlapping networks in each brain region. We show evidence of a brain-wide decrease in between-network integration and inter-subject variability at low relative to high arousal, with differences emerging across regions of the frontoparietal, default mode, motor, limbic, and cerebellum networks. State-dependent changes in k-hubness relate to the actual patterns of network integration within these hubs, suggesting a brain state transition from high to low arousal characterized by global synchronization and reduced network overlaps. We demonstrate that arousal is not limited to specific brain areas known to be directly associated with arousal regulation, but instead has a brain-wide impact that involves high-level between-network communications. Lastly, we show a systematic change in pairwise fMRI signal correlation structures in the arousal state-stratified data, and demonstrate that the choice of global signal regression could result in different conclusions in conventional graph theoretical analysis and in the analysis of k-hubness when studying arousal modulations. Together, our results suggest the presence of global and local effects of pupil-linked arousal modulations on resting state brain functional connectivity.

YNIMG Journal 2022 Journal Article

Large-scale differences in functional organization of left- and right-handed individuals using whole-brain, data-driven analysis of connectivity

Link Tejavibulya
Hannah Peterson
Abigail Greene
Siyuan Gao
Max Rolison
Stephanie Noble
Dustin Scheinost

Handedness influences differences in lateralization of language areas as well as dominance of motor and somatosensory cortices. However, differences in whole-brain functional connectivity (i.e., functional connectomes) due to handedness have been relatively understudied beyond pre-specified networks of interest. Here, we compared functional connectomes of left- and right-handed individuals at the whole brain level. We explored differences in functional connectivity of previously established regions of interest, and showed differences between primarily left- and primarily right-handed individuals in the motor, somatosensory, and language areas using functional connectivity. We then proceeded to investigate these differences in the whole brain and found that the functional connectivity of left- and right-handed individuals are not specific to networks of interest, but extend across every region of the brain. In particular, we found that connections between and within the cerebellum show distinct patterns of connectivity. To put these effects into context, we show that the effect sizes associated with handedness differences account for a similar amount of individual differences in the connectome as sex differences. Together these results shed light on regions of the brain beyond those traditionally explored that contribute to differences in the functional organization of left- and right-handed individuals and underscore that handedness effects are neurobiologically meaningful in addition to being statistically significant.

YNIMG Journal 2022 Journal Article

Leveraging edge-centric networks complements existing network-level inference for functional connectomes

Raimundo X. Rodriguez
Stephanie Noble
Link Tejavibulya
Dustin Scheinost

The human connectome is modular with distinct brain regions clustering together to form large-scale communities, or networks. This concept has recently been leveraged in novel inferencing procedures by averaging the edge-level statistics within networks to induce more powerful inferencing at the network level. However, these networks are constructed based on the similarity between pairs of nodes. Emerging work has described novel edge-centric networks, which instead use the similarity between pairs of edges to construct networks. In this work, we use these edge-centric networks in a network-level inferencing procedure and compare this novel method to traditional inferential procedures and the network-level procedure using node-centric networks. We use data from the Human Connectome Project, the Healthy Brain Network, and the Philadelphia Neurodevelopmental Cohort and use a resampling technique with various sample sizes (n=40, 80, 120) to probe the power and specificity of each method. Across datasets and sample sizes, using the edge-centric networks outperforms using node-centric networks for inference as well as edge-level FDR correction and NBS. Additionally, the edge-centric networks were found to be more consistent in clustering effect sizes of similar values as compared to node-centric networks, although node-centric networks often had a lower average within-network effect size variability. Together, these findings suggest that using edge-centric networks for network-level inference can procure relatively powerful results while remaining similarly accurate to the underlying edge-level effects across networks, complementing previous inferential methods.

YNICL Journal 2022 Journal Article

Neurofeedback-guided kinesthetic motor imagery training in Parkinson’s disease: Randomized trial

Sule Tinaz
Serageldin Kamel
Sai S. Aravala
Mohamed Elfil
Ahmed Bayoumi
Amar Patel
Dustin Scheinost
Rajita Sinha

BACKGROUND: Parkinson's disease (PD) causes difficulty with maintaining the speed, size, and vigor of movements, especially when they are internally generated. We previously proposed that the insula is important in motivating intentional movement via its connections with the dorsomedial frontal cortex (dmFC). We demonstrated that subjects with PD can increase the right insula-dmFC functional connectivity using fMRI-based neurofeedback (NF) combined with kinesthetic motor imagery (MI). The current study is a randomized clinical trial testing whether NF-guided kinesthetic MI training can improve motor performance and increase task-based and resting-state right insula-dmFC functional connectivity in subjects with PD. METHODS: We assigned nondemented subjects with mild PD (Hoehn & Yahr stage ≤ 3) to the experimental kinesthetic MI with NF (MI-NF, n = 22) and active control visual imagery (VI, n = 22) groups. Only the MI-NF group received NF-guided MI training (10-12 runs). The NF signal was based on the right insula-dmFC functional connectivity strength. All subjects also practiced their respective imagery tasks at home daily for 4 weeks. Post-training changes in 1) task-based and resting-state right insula-dmFC functional connectivity were the primary imaging outcomes, and 2) MDS-UPDRS motor exam and motor function scores were the primary and secondary clinical outcomes, respectively. RESULTS: The MI-NF group was not significantly different from the VI group in any of the primary imaging or clinical outcome measures. The MI-NF group reported subjective improvement in kinesthetic body awareness. There was significant and comparable improvement only in motor function scores in both groups (secondary clinical outcome). This improvement correlated with NF regulation of the right insula-dmFC functional connectivity only in the MI-NF group. Both groups showed specific training effects in whole-brain functional connectivity with distinct neural circuits supporting kinesthetic motor and visual imagery (exploratory imaging outcome). CONCLUSIONS: The functional connectivity-based NF regulation was unsuccessful, however, both kinesthetic MI and VI practice improved motor function in our cohort with mild PD.

YNIMG Journal 2021 Journal Article

Resample aggregating improves the generalizability of connectome predictive modeling

David O'Connor
Evelyn M.R. Lake
Dustin Scheinost
R. Todd Constable

It is a longstanding goal of neuroimaging to produce reliable, generalizable models of brain behavior relationships. More recently, data driven predictive models have become popular. However, overfitting is a common problem with statistical models, which impedes model generalization. Cross validation (CV) is often used to estimate expected model performance within sample. Yet, the best way to generate brain behavior models, and apply them out-of-sample, on an unseen dataset, is unclear. As a solution, this study proposes an ensemble learning method, in this case resample aggregating, encompassing both model parameter estimation and feature selection. Here we investigate the use of resampled aggregated models when used to estimate fluid intelligence (fIQ) from fMRI based functional connectivity (FC) data. We take advantage of two large openly available datasets, the Human Connectome Project (HCP), and the Philadelphia Neurodevelopmental Cohort (PNC). We generate aggregated and non-aggregated models of fIQ in the HCP, using the Connectome Prediction Modelling (CPM) framework. Over various test-train splits, these models are evaluated in sample, on left-out HCP data, and out-of-sample, on PNC data. We find that a resample aggregated model performs best both within- and out-of-sample. We also find that feature selection can vary substantially within-sample. More robust feature selection methods, as detailed here, are needed to improve cross sample performance of CPM based brain behavior models.

YNIMG Journal 2021 Journal Article

Smooth graph learning for functional connectivity estimation

Siyuan Gao
Xinyue Xia
Dustin Scheinost
Gal Mishne

Functional connectivity (FC) estimated from functional magnetic resonance imaging (fMRI) signals is important in understanding neural representation and information processing in cortical networks. However, due to a lack of "ground truth" FC pattern, the reliability and robustness of FC estimates are usually examined in downstream FC analysis tasks, such as performing participant's identification (also known as "fingerprinting"). In this paper, we propose to learn FC via a smooth graph learning framework. In particular, we treat each time frame of the fMRI time series as a graph signal on an underlying functional brain graph, and estimate the smooth graph functional connectivity (SGFC) by learning the weighted graph adjacency matrix based on graph signal smoothness assumption. We demonstrate that our approach gives rise to a natural and sparse graph representation of FC from which reliable graph measures can be extracted. Reliability of SGFC is evaluated in the context of fingerprinting and compared to correlation FC (CFC). SGFC achieves higher fingerprinting accuracy across several different experiment settings; the improvement is even more significant when a shorter fMRI scanning length is used for FC estimation. In addition to being reliable, we also validate the cognitive relevance of SGFC by using it to predict fluid intelligence. Finally, in evaluating topological measures of the sparse graph, SGFC reveals a more small-world and modular structure compared to CFC. Together, our results suggest that the smooth graph learning framework produces a naturally sparse, reliable, and cognitive-relevant representation of functional connectivity.

YNIMG Journal 2020 Journal Article

Cluster failure or power failure? Evaluating sensitivity in cluster-level inference

Stephanie Noble
Dustin Scheinost
R. Todd Constable

Pioneering work in human neuroscience has relied on the ability to map brain function using task-based fMRI, but the empirical validity of these inferential methods is still being characterized. A recent landmark study by Eklund and colleagues showed that popular multiple comparison corrections based on cluster extent suffer from unexpectedly low specificity (i.e., high false positive rate). Yet that study's focus on specificity, while important, is incomplete. The validity of a method depends also on its sensitivity (i.e., true positive rate or power), yet the sensitivity of cluster correction remains poorly understood. Here, we assessed the sensitivity of gold-standard nonparametric cluster correction by resampling real data from five tasks in the Human Connectome Project and comparing results with those from the full "ground truth" datasets (n = 480-493). Critically, we found that sensitivity after correction is lower than may be practical for many fMRI applications. In particular, sensitivity to medium-sized effects (|Cohen's d| = 0.5) was less than 20% across tasks on average, about three times smaller than without any correction. Furthermore, cluster extent correction exhibited a spatial bias in sensitivity that was independent of effect size. In comparison, correction based on the Threshold-Free Cluster Enhancement (TFCE) statistic approximately doubled sensitivity across tasks but increased spatial bias. These results suggest that we have, until now, only measured the tip of the iceberg in the activation-mapping literature due to our goal of limiting the familywise error rate through cluster extent-based inference. There is a need to revise our practices to improve sensitivity; we therefore conclude with a list of modern strategies to boost sensitivity while maintaining respectable specificity in future investigations.

YNIMG Journal 2020 Journal Article

Connectome-based neurofeedback: A pilot study to improve sustained attention

Dustin Scheinost
Tiffany W. Hsu
Emily W. Avery
Michelle Hampson
R. Todd Constable
Marvin M. Chun
Monica D. Rosenberg

Real-time functional magnetic resonance imaging (rt-fMRI) neurofeedback is a non-invasive, non-pharmacological therapeutic tool that may be useful for training behavior and alleviating clinical symptoms. Although previous work has used rt-fMRI to target brain activity in or functional connectivity between a small number of brain regions, there is growing evidence that symptoms and behavior emerge from interactions between a number of distinct brain areas. Here, we propose a new method for rt-fMRI, connectome-based neurofeedback, in which intermittent feedback is based on the strength of complex functional networks spanning hundreds of regions and thousands of functional connections. We first demonstrate the technical feasibility of calculating whole-brain functional connectivity in real-time and provide resources for implementing connectome-based neurofeedback. We next show that this approach can be used to provide accurate feedback about the strength of a previously defined connectome-based model of sustained attention, the saCPM, during task performance. Although, in our initial pilot sample, neurofeedback based on saCPM strength did not improve performance on out-of-scanner attention tasks, future work characterizing effects of network target, training duration, and amount of feedback on the efficacy of rt-fMRI can inform experimental or clinical trial designs.

YNIMG Journal 2020 Journal Article

Functional brain connectivity in ex utero premature infants compared to in utero fetuses

Josepheen De Asis-Cruz
Kushal Kapse
Sudeepta K. Basu
Mariam Said
Dustin Scheinost
Jonathan Murnick
Taeun Chang
Adre du Plessis

Brain structural changes in premature infants appear before term age. Functional differences between premature infants and healthy fetuses during this period have yet to be explored. Here, we examined brain connectivity using resting state functional MRI in 25 very premature infants (VPT; gestational age at birth <32 weeks) and 25 healthy fetuses with structurally normal brain MRIs. Resting state data were evaluated using seed-based correlation analysis and network-based statistics using 23 regions of interest (ROIs) per hemisphere. Functional connectivity strength, the Pearson correlation between blood oxygenation level dependent signals over time across all ROIs, was compared between groups. In both cohorts, connectivity between homotopic ROIs showed a decreasing medial to lateral gradient. The cingulate cortex, medial temporal lobe and the basal ganglia shared the strongest connections. In premature infants, connections involving superior temporal, hippocampal, and occipital areas, among others, were stronger compared to fetuses. Premature infants showed stronger connectivity in sensory input and stress-related areas suggesting that extra-uterine environment exposure alters the development of select neural networks in the absence of structural brain injury.

YNIMG Journal 2020 Journal Article

Individualized functional networks reconfigure with cognitive state

Mehraveh Salehi
Amin Karbasi
Daniel S. Barron
Dustin Scheinost
R. Todd Constable

There is extensive evidence that functional organization of the human brain varies dynamically as the brain switches between task demands, or cognitive states. This functional organization also varies across subjects, even when engaged in similar tasks. To date, the functional network organization of the brain has been considered static. In this work, we use fMRI data obtained across multiple cognitive states (task-evoked and rest conditions) and across multiple subjects, to measure state- and subject-specific functional network parcellation (the assignment of nodes to networks). Our parcellation approach provides a measure of how node-to-network assignment (NNA) changes across states and across subjects. We demonstrate that the brain's functional networks are not spatially fixed, but that many nodes change their network membership as a function of cognitive state. Such reconfigurations are highly robust and reliable to the extent that they can be used to predict cognitive state with up to 97% accuracy. Our findings suggest that if functional networks are to be defined via functional clustering of nodes, then it is essential to consider that such definitions may be fluid and cognitive-state dependent.

YNIMG Journal 2020 Journal Article

There is no single functional atlas even for a single individual: Functional parcel definitions change with task

Mehraveh Salehi
Abigail S. Greene
Amin Karbasi
Xilin Shen
Dustin Scheinost
R. Todd Constable

The goal of human brain mapping has long been to delineate the functional subunits in the brain and elucidate the functional role of each of these brain regions. Recent work has focused on whole-brain parcellation of functional Magnetic Resonance Imaging (fMRI) data to identify these subunits and create a functional atlas. Functional connectivity approaches to understand the brain at the network level require such an atlas to assess connections between parcels and extract network properties. While no single functional atlas has emerged as the dominant atlas to date, there remains an underlying assumption that such an atlas exists. Using fMRI data from a highly sampled subject as well as two independent replication data sets, we demonstrate that functional parcellations based on fMRI connectivity data reconfigure substantially and in a meaningful manner, according to brain state.

YNIMG Journal 2019 Journal Article

A decade of test-retest reliability of functional connectivity: A systematic review and meta-analysis

Stephanie Noble
Dustin Scheinost
R. Todd Constable

Background Once considered mere noise, fMRI-based functional connectivity has become a major neuroscience tool in part due to early studies demonstrating its reliability. These fundamental studies revealed only the tip of the iceberg; over the past decade, many test-retest reliability studies have continued to add nuance to our understanding of this complex topic. A summary of these diverse and at times contradictory perspectives is needed. Objectives We aimed to summarize the existing knowledge regarding test-retest reliability of functional connectivity at the most basic unit of analysis: the individual edge level. This entailed (1) a meta-analytic estimate of reliability and (2) a review of factors influencing reliability. Methods A search of Scopus was conducted to identify studies that estimated edge-level test-retest reliability. To facilitate comparisons across studies, eligibility was restricted to studies measuring reliability via the intraclass correlation coefficient (ICC). The meta-analysis included a random effects pooled estimate of mean edge-level ICC, with studies nested within datasets. The review included a narrative summary of factors influencing edge-level ICC. Results From an initial pool of 212 studies, 44 studies were identified for the qualitative review and 25 studies for quantitative meta-analysis. On average, individual edges exhibited a “poor” ICC of 0. 29 (95% CI = 0. 23 to 0. 36). The most reliable measurements tended to involve: (1) stronger, within-network, cortical edges, (2) eyes open, awake, and active recordings, (3) more within-subject data, (4) shorter test-retest intervals, (5) no artifact correction (likely due in part to reliable artifact), and (6) full correlation-based connectivity with shrinkage. Conclusion This study represents the first meta-analysis and systematic review investigating test-retest reliability of edge-level functional connectivity. Key findings suggest there is room for improvement, but care should be taken to avoid promoting reliability at the expense of validity. By pooling existing knowledge regarding this key facet of accuracy, this study supports broader efforts to improve inferences in the field.

YNICL Journal 2019 Journal Article

Amygdala functional connectivity is associated with social impairments in preterm born young adults

Christina B. Johns
Cheryl Lacadie
Betty Vohr
Laura R. Ment
Dustin Scheinost

Survivors of preterm birth experience long-lasting behavioral problems characterized by increased risk of depression, anxiety, and impairments in social functioning. The amygdala is a key region for social functioning and alterations in amygdala structure and connectivity are thought to underlie social functioning deficits in many disorders, including preterm birth. However, functional connectivity of the amygdala and its association with social impairments is not well-studied in preterm participants (PTs). In a group of late adolescents born very PT (600-1250 g birth weight), measures of social and emotional development were examined using the Child Behavior Checklist (CBCL) administered at age 16 (66 term and 161 preterm participants), the Youth Self Report (YSR) administered at age 16 (56 term and 45 preterm participants), and the Vineland Adaptive Behavior Scales (VABS) administered at age 18 (71 term and 190 preterm participants). Amygdala functional connectivity was also examined using resting-state functional magnetic resonance imaging at age 20 (17 term and 19 preterm participants). By parent report, preterm-born adolescents demonstrate increased social impairment compared to their term-born peers. Amygdala connectivity is altered for those prematurely-born, and markers of social functioning correlate with altered amygdala-PCC connectivity. These findings add to knowledge regarding the developmental trajectory of amygdala connectivity in PT and suggest a possible neural underpinning for the well-characterized social impairment experienced by prematurely-born individuals.

YNIMG Journal 2019 Journal Article

Combining multiple connectomes improves predictive modeling of phenotypic measures

Siyuan Gao
Abigail S. Greene
R. Todd Constable
Dustin Scheinost

Resting-state and task-based functional connectivity matrices, or connectomes, are powerful predictors of individual differences in phenotypic measures. However, most of the current state-of-the-art algorithms only build predictive models based on a single connectome for each individual. This approach neglects the complementary information contained in connectomes from different sources and reduces prediction performance. In order to combine different task connectomes into a single predictive model in a principled way, we propose a novel prediction framework, termed multidimensional connectome-based predictive modeling. Two specific algorithms are developed and implemented under this framework. Using two large open-source datasets with multiple tasks—the Human Connectome Project and the Philadelphia Neurodevelopmental Cohort, we validate and compare our framework against performing connectome-based predictive modeling (CPM) on each task connectome independently, CPM on a general functional connectivity matrix created by averaging together all task connectomes for an individual, and CPM with a naïve extension to multiple connectomes where each edge for each task is selected independently. Our framework exhibits superior performance in prediction compared with the other competing methods. We found that different tasks contribute differentially to the final predictive model, suggesting that the battery of tasks used in prediction is an important consideration. This work makes two major contributions: First, two methods for combining multiple connectomes from different task conditions in one predictive model are demonstrated; Second, we show that these models outperform a previously validated single connectome-based predictive model approach.

YNIMG Journal 2019 Journal Article

Dynamic functional connectivity during task performance and rest predicts individual differences in attention across studies

Angus Ho Ching Fong
Kwangsun Yoo
Monica D. Rosenberg
Sheng Zhang
Chiang-shan R. Li
Dustin Scheinost
R. Todd Constable
Marvin M. Chun

Dynamic functional connectivity (DFC) aims to maximize resolvable information from functional brain scans by considering temporal changes in network structure. Recent work has demonstrated that static, i. e. time-invariant resting-state and task-based FC predicts individual differences in behavior, including attention. Here, we show that DFC predicts attention performance across individuals. Sliding-window FC matrices were generated from fMRI data collected during rest and attention task performance by calculating Pearson's r between every pair of nodes of a whole-brain atlas within overlapping 10–60s time segments. Next, variance in r values across windows was taken to quantify temporal variability in the strength of each connection, resulting in a DFC connectome for each individual. In a leave-one-subject-out-cross-validation approach, partial-least-square-regression (PLSR) models were then trained to predict attention task performance from DFC matrices. Predicted and observed attention scores were significantly correlated, indicating successful out-of-sample predictions across rest and task conditions. Combining DFC and static FC features numerically improves predictions over either model alone, but the improvement was not statistically significant. Moreover, dynamic and combined models generalized to two independent data sets (participants performing the Attention Network Task and the stop-signal task). Edges with significant PLSR coefficients concentrated in visual, motor, and executive-control brain networks; moreover, most of these coefficients were negative. Thus, better attention may rely on more stable, i. e. less variable, information flow between brain regions.

YNIMG Journal 2019 Journal Article

Multivariate approaches improve the reliability and validity of functional connectivity and prediction of individual behaviors

Kwangsun Yoo
Monica D. Rosenberg
Stephanie Noble
Dustin Scheinost
R. Todd Constable
Marvin M. Chun

Brain functional connectivity features can predict cognition and behavior at the level of the individual. Most studies measure univariate signals, correlating timecourses from the average of constituent voxels in each node. While straightforward, this approach overlooks the spatial patterns of voxel-wise signals within individual nodes. Given that multivariate spatial activity patterns across voxels can improve fMRI measures of mental representations, here we asked whether using voxel-wise timecourses can better characterize region-by-region interactions relative to univariate approaches. Using two fMRI datasets, the Human Connectome Project sample and a local test-retest sample, we measured multivariate functional connectivity with multivariate distance correlation and univariate connectivity with Pearson's correlation. We compared multivariate and univariate connectivity estimates, demonstrating that relative to univariate estimates, multivariate estimates exhibited higher reliability at both the edge-level and connectome-level, stronger prediction of individual differences, and greater sensitivity to brain states within individuals. Our findings suggest that multivariate estimates reliably provide more powerful information about an individual's functional brain organization and its relation to cognitive skills.

YNIMG Journal 2019 Journal Article

Ten simple rules for predictive modeling of individual differences in neuroimaging

Dustin Scheinost
Stephanie Noble
Corey Horien
Abigail S. Greene
Evelyn MR. Lake
Mehraveh Salehi
Siyuan Gao
Xilin Shen

Establishing brain-behavior associations that map brain organization to phenotypic measures and generalize to novel individuals remains a challenge in neuroimaging. Predictive modeling approaches that define and validate models with independent datasets offer a solution to this problem. While these methods can detect novel and generalizable brain-behavior associations, they can be daunting, which has limited their use by the wider connectivity community. Here, we offer practical advice and examples based on functional magnetic resonance imaging (fMRI) functional connectivity data for implementing these approaches. We hope these ten rules will increase the use of predictive models with neuroimaging data.

YNIMG Journal 2019 Journal Article

The individual functional connectome is unique and stable over months to years

Corey Horien
Xilin Shen
Dustin Scheinost
R. Todd Constable

Functional connectomes computed from fMRI provide a means to characterize individual differences in the patterns of BOLD synchronization across regions of the entire brain. Using four resting-state fMRI datasets with a wide range of ages, we show that individual differences of the functional connectome are stable across 3 months to 1–2 years (and even detectable at above-chance levels across 3 years). Medial frontal and frontoparietal networks appear to be both unique and stable, resulting in high ID rates, as did a combination of these two networks. We conduct analyses demonstrating that these results are not driven by head motion. We also show that edges contributing the most to a successful ID tend to connect nodes in the frontal and parietal cortices, while edges contributing the least tend to connect cross-hemispheric homologs. Our results demonstrate that the functional connectome is stable across years and that high ID rates are not an idiosyncratic aspect of a specific dataset, but rather reflect stable individual differences in the functional connectivity of the brain.

YNIMG Journal 2018 Journal Article

An exemplar-based approach to individualized parcellation reveals the need for sex specific functional networks

Mehraveh Salehi
Amin Karbasi
Xilin Shen
Dustin Scheinost
R. Todd Constable

Recent work with functional connectivity data has led to significant progress in understanding the functional organization of the brain. While the majority of the literature has focused on group-level parcellation approaches, there is ample evidence that the brain varies in both structure and function across individuals. In this work, we introduce a parcellation technique that incorporates delineation of functional networks both at the individual- and group-level. The proposed technique deploys the notion of “submodularity” to jointly parcellate the cerebral cortex while establishing an inclusive correspondence between the individualized functional networks. Using this parcellation technique, we successfully established a cross-validated predictive model that predicts individuals' sex, solely based on the parcellation schemes (i. e. the node-to-network assignment vectors). The sex prediction finding illustrates that individualized parcellation of functional networks can reveal subgroups in a population and suggests that the use of a global network parcellation may overlook fundamental differences in network organization. This is a particularly important point to consider in studies comparing patients versus controls or even patient subgroups. Network organization may differ between individuals and global configurations should not be assumed. This approach to the individualized study of functional organization in the brain has many implications for both neuroscience and clinical applications.

YNIMG Journal 2018 Journal Article

Connectome-based predictive modeling of attention: Comparing different functional connectivity features and prediction methods across datasets

Kwangsun Yoo
Monica D. Rosenberg
Wei-Ting Hsu
Sheng Zhang
Chiang-shan R. Li
Dustin Scheinost
R. Todd Constable
Marvin M. Chun

Connectome-based predictive modeling (CPM; Finn et al. , 2015; Shen et al. , 2017) was recently developed to predict individual differences in traits and behaviors, including fluid intelligence (Finn et al. , 2015) and sustained attention (Rosenberg et al. , 2016a), from functional brain connectivity (FC) measured with fMRI. Here, using the CPM framework, we compared the predictive power of three different measures of FC (Pearson's correlation, accordance, and discordance) and two different prediction algorithms (linear and partial least square [PLS] regression) for attention function. Accordance and discordance are recently proposed FC measures that respectively track in-phase synchronization and out-of-phase anti-correlation (Meskaldji et al. , 2015). We defined connectome-based models using task-based or resting-state FC data, and tested the effects of (1) functional connectivity measure and (2) feature-selection/prediction algorithm on individualized attention predictions. Models were internally validated in a training dataset using leave-one-subject-out cross-validation, and externally validated with three independent datasets. The training dataset included fMRI data collected while participants performed a sustained attention task and rested (N = 25; Rosenberg et al. , 2016a). The validation datasets included: 1) data collected during performance of a stop-signal task and at rest (N = 83, including 19 participants who were administered methylphenidate prior to scanning; Farr et al. , 2014a; Rosenberg et al. , 2016b), 2) data collected during Attention Network Task performance and rest (N = 41, Rosenberg et al. , in press), and 3) resting-state data and ADHD symptom severity from the ADHD-200 Consortium (N = 113; Rosenberg et al. , 2016a). Models defined using all combinations of functional connectivity measure (Pearson's correlation, accordance, and discordance) and prediction algorithm (linear and PLS regression) predicted attentional abilities, with correlations between predicted and observed measures of attention as high as 0. 9 for internal validation, and 0. 6 for external validation (all p's < 0. 05). Models trained on task data outperformed models trained on rest data. Pearson's correlation and accordance features generally showed a small numerical advantage over discordance features, while PLS regression models were usually better than linear regression models. Overall, in addition to correlation features combined with linear models (Rosenberg et al. , 2016a), it is useful to consider accordance features and PLS regression for CPM.

YNIMG Journal 2018 Journal Article

Considering factors affecting the connectome-based identification process: Comment on Waller et al.

Corey Horien
Stephanie Noble
Emily S. Finn
Xilin Shen
Dustin Scheinost
R. Todd Constable

A recent study by Waller and colleagues evaluated the reliability, specificity, and generalizability of using functional connectivity data to identify individuals from a group. The authors note they were able to replicate identification rates in a larger version of the original Human Connectome Project (HCP) dataset. However, they also report lower identification accuracies when using historical neuroimaging acquisitions with low spatial and temporal resolution. The authors suggest that their results indicate connectomes derived from historical imaging data may be similar across individuals, to the extent that this connectome-based approach may be inappropriate for precision psychiatry and the goal of drawing inferences based on subject-level data. Here we note that the authors did not take into account factors affecting data quality and hence identification rates, independent of whether a low spatiotemporal resolution acquisition or a high spatiotemporal resolution acquisition is used. Specifically, we show here that the amount of data collected per subject and in-scanner motion are the predominant factors influencing identification rates, not the spatiotemporal resolution of the acquisition. To do this, we investigated identification rates in the HCP dataset as a function of the amount of data and motion. Using a dataset from the Consortium for Reliability and Reproducibility (CoRR), we investigated the impact of multiband versus non-multiband imaging parameters; that is, high spatiotemporal resolution versus low spatiotemporal resolution acquisitions. We show scan length and motion affect identification, whereas the imaging protocol does not affect these rates. Our results suggest that motion and amount of data per subject are the primary factors impacting individual connectivity profiles, but that within these constraints, individual differences in the connectome are readily observable.

YNIMG Journal 2018 Journal Article

Time course of clinical change following neurofeedback

Mariela Rance
Christopher Walsh
Denis G. Sukhodolsky
Brian Pittman
Maolin Qiu
Stephen A. Kichuk
Suzanne Wasylink
William N. Koller

Neurofeedback – learning to modulate brain function through real-time monitoring of current brain state – is both a powerful method to perturb and probe brain function and an exciting potential clinical tool. For neurofeedback effects to be useful clinically, they must persist. Here we examine the time course of symptom change following neurofeedback in two clinical populations, combining data from two ongoing neurofeedback studies. This analysis reveals a shared pattern of symptom change, in which symptoms continue to improve for weeks after neurofeedback. This time course has several implications for future neurofeedback studies. Most neurofeedback studies are not designed to test an intervention with this temporal pattern of response. We recommend that new studies incorporate regular follow-up of subjects for weeks or months after the intervention to ensure that the time point of greatest effect is sampled. Furthermore, this time course of continuing clinical change has implications for crossover designs, which may attribute long-term, ongoing effects of real neurofeedback to the control intervention that follows. Finally, interleaving neurofeedback sessions with assessments and examining when clinical improvement peaks may not be an appropriate approach to determine the optimal number of sessions for an application.

YNIMG Journal 2017 Journal Article

Can brain state be manipulated to emphasize individual differences in functional connectivity?

Emily S. Finn
Dustin Scheinost
Daniel M. Finn
Xilin Shen
Xenophon Papademetris
R. Todd Constable

While neuroimaging studies typically collapse data from many subjects, brain functional organization varies between individuals, and characterizing this variability is crucial for relating brain activity to behavioral phenotypes. Rest has become the default state for probing individual differences, chiefly because it is easy to acquire and a supposed neutral backdrop. However, the assumption that rest is the optimal condition for individual differences research is largely untested. In fact, other brain states may afford a better ratio of within- to between-subject variability, facilitating biomarker discovery. Depending on the trait or behavior under study, certain tasks may bring out meaningful idiosyncrasies across subjects, essentially enhancing the individual signal in networks of interest beyond what can be measured at rest. Here, we review theoretical considerations and existing work on how brain state influences individual differences in functional connectivity, present some preliminary analyses of within- and between-subject variability across conditions using data from the Human Connectome Project, and outline questions for future study.

YNICL Journal 2017 Journal Article

Cingulate cortex functional connectivity predicts future relapse in alcohol dependent individuals

Yasmin Zakiniaeiz
Dustin Scheinost
Dongju Seo
Rajita Sinha
R. Todd Constable

Alcohol dependence is a chronic relapsing illness. Alcohol and stress cues have consistently been shown to increase craving and relapse risk in recovering alcohol dependent (AUD) patients. However, differences in functional connectivity in response to these cues have not been studied using data-driven approaches. Here, voxel-wise connectivity is used in a whole-brain investigation of functional connectivity differences associated with alcohol and stress cues and to examine whether these differences are related to subsequent relapse. In Study 1, 45, 4- to 8-week abstinent, recovering AUD patients underwent functional magnetic resonance imaging during individualized imagery of alcohol, stress, and neutral cues. Relapse measures were collected prospectively for 90 days post-discharge from inpatient treatment. AUD patients showed blunted anterior (ACC), mid (MCC) and posterior cingulate cortex (PCC), voxel-wise connectivity responses to stress compared to neutral cues and blunted PCC response to alcohol compared to neutral cues. Using Cox proportional hazard regression, weaker connectivity in ACC and MCC during neutral exposure was associated with longer time to relapse (better recovery outcome). Similarly, greater connectivity in PCC during alcohol-cue compared to stress cue was associated with longer time to relapse. In Study 2, a sub-group of 30 AUD patients were demographically-matched to 30 healthy control (HC) participants for group comparisons. AUD compared to HC participants showed reduced cingulate connectivity during alcohol and stress cues. Using novel data-driven approaches, the cingulate cortex emerged as a key region in the disruption of functional connectivity during alcohol and stress-cue processing in AUD patients and as a marker of subsequent alcohol relapse.

YNIMG Journal 2017 Journal Article

Multi-modal analysis of functional connectivity and cerebral blood flow reveals shared and unique effects of propofol in large-scale brain networks

Maolin Qiu
Dustin Scheinost
Ramachandran Ramani
R. Todd Constable

Anesthesia-induced changes in functional connectivity and cerebral blow flow (CBF) in large-scale brain networks have emerged as key markers of reduced consciousness. However, studies of functional connectivity disagree on which large-scale networks are altered or preserved during anesthesia, making it difficult to find a consensus amount studies. Additionally, pharmacological alterations in CBF could amplify or occlude changes in connectivity due to the shared variance between CBF and connectivity. Here, we used data-driven connectivity methods and multi-modal imaging to investigate shared and unique neural correlates of reduced consciousness for connectivity in large-scale brain networks. Rs-fMRI and CBF data were collected from the same subjects during an awake and deep sedation condition induced by propofol. We measured whole-brain connectivity using the intrinsic connectivity distribution (ICD), a method not reliant on pre-defined seed regions, networks of interest, or connectivity thresholds. The shared and unique variance between connectivity and CBF were investigated. Finally, to account for shared variance, we present a novel extension to ICD that incorporates cerebral blood flow (CBF) as a scaling factor in the calculation of global connectivity, labeled CBF-adjusted ICD). We observed altered connectivity in multiple large-scale brain networks including the default mode (DMN), salience, visual, and motor networks and reduced CBF in the DMN, frontoparietal network, and thalamus. Regional connectivity and CBF were significantly correlated during both the awake and propofol condition. Nevertheless changes in connectivity and CBF between the awake and deep sedation condition were only significantly correlated in a subsystem of the DMN, suggesting that, while there is significant shared variance between the modalities, changes due to propofol are relatively unique. Similar, but less significant, results were observed in the CBF-adjusted ICD analysis, providing additional evidence that connectivity differences were not fully explained by CBF. In conclusion, these results provide further evidence of alterations in large-scale brain networks are associated with reduced consciousness and suggest that different modalities capture unique aspects of these large scale changes.

YNIMG Journal 2017 Journal Article

Multisite reliability of MR-based functional connectivity

Stephanie Noble
Dustin Scheinost
Emily S. Finn
Xilin Shen
Xenophon Papademetris
Sarah C. McEwen
Carrie E. Bearden
Jean Addington

Recent years have witnessed an increasing number of multisite MRI functional connectivity (fcMRI) studies. While multisite studies provide an efficient way to accelerate data collection and increase sample sizes, especially for rare clinical populations, any effects of site or MRI scanner could ultimately limit power and weaken results. Little data exists on the stability of functional connectivity measurements across sites and sessions. In this study, we assess the influence of site and session on resting state functional connectivity measurements in a healthy cohort of traveling subjects (8 subjects scanned twice at each of 8 sites) scanned as part of the North American Prodrome Longitudinal Study (NAPLS). Reliability was investigated in three types of connectivity analyses: (1) seed-based connectivity with posterior cingulate cortex (PCC), right motor cortex (RMC), and left thalamus (LT) as seeds; (2) the intrinsic connectivity distribution (ICD), a voxel-wise connectivity measure; and (3) matrix connectivity, a whole-brain, atlas-based approach to assessing connectivity between nodes. Contributions to variability in connectivity due to subject, site, and day-of-scan were quantified and used to assess between-session (test-retest) reliability in accordance with Generalizability Theory. Overall, no major site, scanner manufacturer, or day-of-scan effects were found for the univariate connectivity analyses; instead, subject effects dominated relative to the other measured factors. However, summaries of voxel-wise connectivity were found to be sensitive to site and scanner manufacturer effects. For all connectivity measures, although subject variance was three times the site variance, the residual represented 60–80% of the variance, indicating that connectivity differed greatly from scan to scan independent of any of the measured factors (i. e. , subject, site, and day-of-scan). Thus, for a single 5min scan, reliability across connectivity measures was poor (ICC=0. 07–0. 17), but increased with increasing scan duration (ICC=0. 21–0. 36 at 25min). The limited effects of site and scanner manufacturer support the use of multisite studies, such as NAPLS, as a viable means of collecting data on rare populations and increasing power in univariate functional connectivity studies. However, the results indicate that aggregation of fcMRI data across longer scan durations is necessary to increase the reliability of connectivity estimates at the single-subject level.

YNICL Journal 2016 Journal Article

Language at rest: A longitudinal study of intrinsic functional connectivity in preterm children

Megan A. Rowlands
Dustin Scheinost
Cheryl Lacadie
Betty Vohr
Fangyong Li
Karen C. Schneider
R. Todd Constable
Laura R. Ment

BACKGROUND: Preterm (PT) children show early cognitive and language deficits and display altered cortical connectivity for language compared to term (T) children. Developmentally, functional connectivity networks become more segregated and integrated, through the weakening of short-range and strengthening of long-range connections. METHODS: Longitudinal intrinsic connectivity distribution (ICD) values were assessed in PT (n = 13) compared to T children (n = 12) at ages 8 vs. 16 using a Linear Mixed Effects model. Connectivity values in regions generated by the group × age interaction analysis were then correlated to scores on full IQ (FSIQ), verbal IQ (VIQ), verbal comprehension IQ (VCIQ), performance IQ (PIQ), Peabody picture vocabulary test-revised (PPVT-R), and Rapid Naming Composite (RDRL_Cmp). RESULTS: Nine regions were generated by the group × age interaction analysis. PT connectivity significantly increased over time in all but two regions, and they ultimately displayed greater relative connectivity at age 16 than Ts in all areas except the left occipito-temporal cortex (OTC). PTs underwent significant connectivity reductions in the left OTC, which corresponded with worse performance on FSIQ, VIQ, and PIQ. These findings differed from Ts, who did not undergo any significant changes in connectivity over time. CONCLUSIONS: These findings suggest that the developmental alterations in connectivity in PT children at adolescence are both pervasive and widespread. The persistent and worsening cognitive and language deficits noted in the PT subjects may be attributed to the loss of connections in the left OTC.

YNICL Journal 2016 Journal Article

Prenatal stress alters amygdala functional connectivity in preterm neonates

Dustin Scheinost
Soo Hyun Kwon
Cheryl Lacadie
Gordon Sze
Rajita Sinha
R. Todd Constable
Laura R. Ment

Exposure to prenatal and early-life stress results in alterations in neural connectivity and an increased risk for neuropsychiatric disorders. In particular, alterations in amygdala connectivity have emerged as a common effect across several recent studies. However, the impact of prenatal stress exposure on the functional organization of the amygdala has yet to be explored in the prematurely-born, a population at high risk for neuropsychiatric disorders. We test the hypothesis that preterm birth and prenatal exposure to maternal stress alter functional connectivity of the amygdala using two independent cohorts. The first cohort is used to establish the effects of preterm birth and consists of 12 very preterm neonates and 25 term controls, all without prenatal stress exposure. The second is analyzed to establish the effects of prenatal stress exposure and consists of 16 extremely preterm neonates with prenatal stress exposure and 10 extremely preterm neonates with no known prenatal stress exposure. Standard resting-state functional magnetic resonance imaging and seed connectivity methods are used. When compared to term controls, very preterm neonates show significantly reduced connectivity between the amygdala and the thalamus, the hypothalamus, the brainstem, and the insula (p < 0.05). Similarly, when compared to extremely preterm neonates without exposure to prenatal stress, extremely preterm neonates with exposure to prenatal stress show significantly less connectivity between the left amygdala and the thalamus, the hypothalamus, and the peristriate cortex (p < 0.05). Exploratory analysis of the combined cohorts suggests additive effects of prenatal stress on alterations in amygdala connectivity associated with preterm birth. Functional connectivity from the amygdala to other subcortical regions is decreased in preterm neonates compared to term controls. In addition, these data, for the first time, suggest that prenatal stress exposure amplifies these decreases.

YNIMG Journal 2015 Journal Article

Adaptive mechanisms of developing brain: Cerebral lateralization in the prematurely-born

Soo Hyun Kwon
Dustin Scheinost
Cheryl Lacadie
Gordon Sze
Karen C. Schneider
Feng Dai
R. Todd Constable
Laura R. Ment

Preterm birth results in alterations in neural connectivity, but the impact of prematurity on the functional organization of the developing brain has yet to be explored. To test the hypothesis that preterm birth alters cortical organization during the late second and third trimesters of gestation, we interrogated cerebral lateralization at rest in 26 very preterm subjects (birth weight 500–1500g) with no evidence of brain injury and 25 healthy term control subjects at term equivalent age. Employing an unbiased voxel-based measure of functional connectivity, these data demonstrated that cerebral lateralization is impaired in the prematurely-born. At term equivalent age, preterm neonates showed significantly less lateralization in regions subserving both receptive and expressive language, left Brodmann (BA) areas insula–BA22–BA21 and L BA45–BA47 (p <0. 05 corrected for multiple comparisons for both). Exploratory region of interest analyses demonstrated significantly less inter-hemispheric connectivity from L BA22 to R BA22 in preterm infants compared to term controls (p <0. 005) and from R BA22 to its homolog (p <0. 005). L BA22, Wernicke's area, was more strongly connected to R BA39, foreshadowing neural networks for language in preterm subjects at school age, adolescence and young adulthood. For these very preterm neonates born at less than 30weeks' PMA, the degree of prematurity had no influence on lateralization in these differential regions.

YNIMG Journal 2015 Journal Article

The (in)stability of functional brain network measures across thresholds

Kathleen A. Garrison
Dustin Scheinost
Emily S. Finn
Xilin Shen
R. Todd Constable

The large-scale organization of the brain has features of complex networks that can be quantified using network measures from graph theory. However, many network measures were designed to be calculated on binary graphs, whereas functional brain organization is typically inferred from a continuous measure of correlations in temporal signal between brain regions. Thresholding is a necessary step to use binary graphs derived from functional connectivity data. However, there is no current consensus on what threshold to use, and network measures and group contrasts may be unstable across thresholds. Nevertheless, whole-brain network analyses are being applied widely with findings typically reported at an arbitrary threshold or range of thresholds. This study sought to evaluate the stability of network measures across thresholds in a large resting state functional connectivity dataset. Network measures were evaluated across absolute (correlation-based) and proportional (sparsity-based) thresholds, and compared between sex and age groups. Overall, network measures were found to be unstable across absolute thresholds. For example, the direction of group differences in a given network measure may change depending on the threshold. Network measures were found to be more stable across proportional thresholds. These results demonstrate that caution should be used when applying thresholds to functional connectivity data and when interpreting results from binary graph models.

YNIMG Journal 2014 Journal Article

The impact of image smoothness on intrinsic functional connectivity and head motion confounds

Dustin Scheinost
Xenophon Papademetris
R. Todd Constable

We present a novel method for controlling the effects of group differences in motion on functional connectivity studies. Resting-state functional magnetic resonance imaging (rs-fMRI) is a powerful tool that allows for the assessment of whole-brain functional organization across a wide range of clinical populations. However, as highlighted by recent studies, many measures commonly used in rs-fMRI are highly correlated with subject head movement. A source of this problem is that motion itself, and motion correction algorithms, lead to spatial smoothing, which is then variable across the brain and across subjects or groups dependent upon the amount of motion present during scanning. Studies aimed at elucidating differences between populations that have different head-motion characteristics (e. g. , patients often move more in the scanner than healthy control subjects) are significantly confounded by these effects. In this work, we propose a solution to this problem, uniform smoothing, which ensures that all subject images in a study have equal effective spatial resolution. We establish that differences in the intrinsic smoothness of images across a group can confound connectivity results and link these differences in smoothness to motion. We demonstrate that eliminating these smoothness differences via our uniform smoothing solution is successful in reducing confounds related to the differences in head motion between subjects.

YNIMG Journal 2013 Journal Article

A left cerebellar pathway mediates language in prematurely-born young adults

R. Todd Constable
Betty R. Vohr
Dustin Scheinost
Jennifer R. Benjamin
Robert K. Fulbright
Cheryl Lacadie
Karen C. Schneider
Karol H. Katz

Preterm (PT) subjects are at risk for developmental delay, and task-based studies suggest that developmental disorders may be due to alterations in neural connectivity. Since emerging data imply the importance of right cerebellar function for language acquisition in typical development, we hypothesized that PT subjects would have alternate areas of cerebellar connectivity, and that these areas would be responsible for differences in cognitive outcomes between PT subjects and term controls at age 20years. Nineteen PT and 19 term control young adults were prospectively studied using resting-state functional MRI (fMRI) to create voxel-based contrast maps reflecting the functional connectivity of each tissue element in the grey matter through analysis of the intrinsic connectivity contrast degree (ICC-d). Left cerebellar ICC-d differences between subjects identified a region of interest that was used for subsequent seed-based connectivity analyses. Subjects underwent standardized language testing, and correlations with cognitive outcomes were assessed. There were no differences in gender, hand preference, maternal education, age at study, or Peabody Picture Vocabulary Test (PPVT) scores. Functional connectivity (FcMRI) demonstrated increased tissue connectivity in the biventer, simple and quadrangular lobules of the L cerebellum (p<0. 05) in PTs compared to term controls; seed-based analyses from these regions demonstrated alterations in connectivity from L cerebellum to both R and L inferior frontal gyri (IFG) in PTs compared to term controls. For PTs but not term controls, there were significant positive correlations between these connections and PPVT scores (R IFG: r=0. 555, p=0. 01; L IFG: r=0. 454, p=0. 05), as well as Verbal Comprehension Index (VCI) scores (R IFG: r=0. 472, p=0. 04). These data suggest the presence of a left cerebellar language circuit in PT subjects at young adulthood. These findings may represent either a delay in maturation or the engagement of alternative neural pathways for language in the developing PT brain.

YNIMG Journal 2013 Journal Article

Real-time fMRI links subjective experience with brain activity during focused attention

Kathleen A. Garrison
Dustin Scheinost
Patrick D. Worhunsky
Hani M. Elwafi
Thomas A. Thornhill
Evan Thompson
Clifford Saron
Gaëlle Desbordes

Recent advances in brain imaging have improved the measure of neural processes related to perceptual, cognitive and affective functions, yet the relation between brain activity and subjective experience remains poorly characterized. In part, it is a challenge to obtain reliable accounts of participant's experience in such studies. Here we addressed this limitation by utilizing experienced meditators who are expert in introspection. We tested a novel method to link objective and subjective data, using real-time fMRI (rt-fMRI) to provide participants with feedback of their own brain activity during an ongoing task. We provided real-time feedback during a focused attention task from the posterior cingulate cortex, a hub of the default mode network shown to be activated during mind-wandering and deactivated during meditation. In a first experiment, both meditators and non-meditators reported significant correspondence between the feedback graph and their subjective experience of focused attention and mind-wandering. When instructed to volitionally decrease the feedback graph, meditators, but not non-meditators, showed significant deactivation of the posterior cingulate cortex. We were able to replicate these results in a separate group of meditators using a novel step-wise rt-fMRI discovery protocol in which participants were not provided with prior knowledge of the expected relationship between their experience and the feedback graph (i. e. , focused attention versus mind-wandering). These findings support the feasibility of using rt-fMRI to link objective measures of brain activity with reports of ongoing subjective experience in cognitive neuroscience research, and demonstrate the generalization of expertise in introspective awareness to novel contexts.

YNIMG Journal 2011 Journal Article

Serial monitoring of endogenous neuroblast migration by cellular MRI

Dorit Granot
Dustin Scheinost
Eleni A. Markakis
Xenios Papademetris
Erik M. Shapiro

Endogenous neural progenitor cell migration in vivo can be monitored using MRI-based cell tracking. The current protocol is that micron sized iron oxide particles (MPIOs) are injected into the lateral ventricle proximal to the neural stem cell niche in the brain. MPIOs are endocytosed and incorporated into the neural progenitor cell population, making them visible by gradient echo MRI. Here this new method is extended to serially quantify cell migration. Initially, in vivo cell labeling methodologies were optimized, as high susceptibility effects from the MPIOs generate substantial signal loss around the injection site, masking early migratory events. Then, using improved labeling conditions, a longitudinal study was conducted over two weeks to quantify the migration of labeled progenitor cells toward the olfactory bulb (OB). By 3days following injection, we calculated 0. 26% of the volume of the OB containing labeled cells. By 8days, this volume nearly doubled to 0. 49% and plateaued. These MRI results are in accordance with our data on iron quantification from the OB and with those from purely immunohistochemical studies.