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David Lipshutz

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10 papers

2 author rows

ICLR Conference 2025 Conference Paper

Comparing noisy neural population dynamics using optimal transport distances

Amin Nejatbakhsh
Victor Geadah
Alex H. Williams
David Lipshutz

Biological and artificial neural systems form high-dimensional neural representations that underpin their computational capabilities. Methods for quantifying geometric similarity in neural representations have become a popular tool for identifying computational principles that are potentially shared across neural systems. These methods generally assume that neural responses are deterministic and static. However, responses of biological systems, and some artificial systems, are noisy and dynamically unfold over time. Furthermore, these characteristics can have substantial influence on a system’s computational capabilities. Here, we demonstrate that existing metrics can fail to capture key differences between neural systems with noisy dynamic responses. We then propose a metric for comparing the geometry of noisy neural trajectories, which can be derived as an optimal transport distance between Gaussian processes. We use the metric to compare models of neural responses in different regions of the motor system and to compare the dynamics of latent diffusion models for text-to-image synthesis.

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ICLR Conference 2025 Conference Paper

Discriminating image representations with principal distortions

Jenelle Feather
David Lipshutz
Sarah E. Harvey
Alex H. Williams
Eero P. Simoncelli

Image representations (artificial or biological) are often compared in terms of their global geometric structure; however, representations with similar global structure can have strikingly different local geometries. Here, we propose a framework for comparing a set of image representations in terms of their local geometries. We quantify the local geometry of a representation using the Fisher information matrix, a standard statistical tool for characterizing the sensitivity to local stimulus distortions, and use this as a substrate for a metric on the local geometry in the vicinity of a base image. This metric may then be used to optimally differentiate a set of models, by finding a pair of "principal distortions" that maximize the variance of the models under this metric. As an example, we use this framework to compare a set of simple models of the early visual system, identifying a novel set of image distortions that allow immediate comparison of the models by visual inspection. In a second example, we apply our method to a set of deep neural network models and reveal differences in the local geometry that arise due to architecture and training types. These examples demonstrate how our framework can be used to probe for informative differences in local sensitivities between complex models, and suggest how it could be used to compare model representations with human perception.

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NeurIPS Conference 2025 Conference Paper

Modeling Neural Activity with Conditionally Linear Dynamical Systems

Victor Geadah
Amin Nejatbakhsh
David Lipshutz
Jonathan Pillow
Alex Williams

Neural population activity exhibits complex, nonlinear dynamics, varying in time, over trials, and across experimental conditions. Here, we develop Conditionally Linear Dynamical System (CLDS) models as a general-purpose method to characterize these dynamics. These models use Gaussian Process priors to capture the nonlinear dependence of circuit dynamics on task and behavioral variables. Conditioned on these covariates, the data is modeled with linear dynamics. This allows for transparent interpretation and tractable Bayesian inference. We find that CLDS models can perform well even in severely data-limited regimes (e. g. one trial per condition) due to their Bayesian formulation and ability to share statistical power across nearby task conditions. In example applications, we apply CLDS to model thalamic neurons that nonlinearly encode heading direction and to model motor cortical neurons during a cued-reaching task.

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NeurIPS Conference 2024 Conference Paper

Shaping the distribution of neural responses with interneurons in a recurrent circuit model

David Lipshutz
Eero Simoncelli

Efficient coding theory posits that sensory circuits transform natural signals into neural representations that maximize information transmission subject to resource constraints. Local interneurons are thought to play an important role in these transformations, shaping patterns of circuit activity to facilitate and direct information flow. However, the relationship between these coordinated, nonlinear, circuit-level transformations and the properties of interneurons (e. g. , connectivity, activation functions) remains unknown. Here, we propose a normative computational model that establishes such a relationship. Our model is derived from an optimal transport objective that conceptualizes the circuit's input-response function as transforming the inputs to achieve a target response distribution. The circuit, which is comprised of primary neurons that are recurrently connected to a set of local interneurons, continuously optimizes this objective by dynamically adjusting both the synaptic connections between neurons as well as the interneuron activation functions. In an application motivated by redundancy reduction theory, we demonstrate that when the inputs are natural image statistics and the target distribution is a spherical Gaussian, the circuit learns a nonlinear transformation that significantly reduces statistical dependencies in neural responses. Overall, our results provide a framework in which the distribution of circuit responses is systematically and nonlinearly controlled by adjustment of interneuron connectivity and activation functions.

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ICML Conference 2023 Conference Paper

Adaptive Whitening in Neural Populations with Gain-modulating Interneurons

Lyndon R. Duong
David Lipshutz
David J. Heeger
Dmitri B. Chklovskii
Eero P. Simoncelli

Statistical whitening transformations play a fundamental role in many computational systems, and may also play an important role in biological sensory systems. Existing neural circuit models of adaptive whitening operate by modifying synaptic interactions; however, such modifications would seem both too slow and insufficiently reversible. Motivated by the extensive neuroscience literature on gain modulation, we propose an alternative model that adaptively whitens its responses by modulating the gains of individual neurons. Starting from a novel whitening objective, we derive an online algorithm that whitens its outputs by adjusting the marginal variances of an overcomplete set of projections. We map the algorithm onto a recurrent neural network with fixed synaptic weights and gain-modulating interneurons. We demonstrate numerically that sign-constraining the gains improves robustness of the network to ill-conditioned inputs, and a generalization of the circuit achieves a form of local whitening in convolutional populations, such as those found throughout the visual or auditory systems.

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NeurIPS Conference 2023 Conference Paper

Adaptive whitening with fast gain modulation and slow synaptic plasticity

Lyndon Duong
Eero Simoncelli
Dmitri Chklovskii
David Lipshutz

Neurons in early sensory areas rapidly adapt to changing sensory statistics, both by normalizing the variance of their individual responses and by reducing correlations between their responses. Together, these transformations may be viewed as an adaptive form of statistical whitening. Existing mechanistic models of adaptive whitening exclusively use either synaptic plasticity or gain modulation as the biological substrate for adaptation; however, on their own, each of these models has significant limitations. In this work, we unify these approaches in a normative multi-timescale mechanistic model that adaptively whitens its responses with complementary computational roles for synaptic plasticity and gain modulation. Gains are modified on a fast timescale to adapt to the current statistical context, whereas synapses are modified on a slow timescale to match structural properties of the input statistics that are invariant across contexts. Our model is derived from a novel multi-timescale whitening objective that factorizes the inverse whitening matrix into basis vectors, which correspond to synaptic weights, and a diagonal matrix, which corresponds to neuronal gains. We test our model on synthetic and natural datasets and find that the synapses learn optimal configurations over long timescales that enable adaptive whitening on short timescales using gain modulation.

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ICLR Conference 2023 Conference Paper

Interneurons accelerate learning dynamics in recurrent neural networks for statistical adaptation

David Lipshutz
Cengiz Pehlevan
Dmitri B. Chklovskii

Early sensory systems in the brain rapidly adapt to fluctuating input statistics, which requires recurrent communication between neurons. Mechanistically, such recurrent communication is often indirect and mediated by local interneurons. In this work, we explore the computational benefits of mediating recurrent communication via interneurons compared with direct recurrent connections. To this end, we consider two mathematically tractable recurrent neural networks that statistically whiten their inputs --- one with direct recurrent connections and the other with interneurons that mediate recurrent communication. By analyzing the corresponding continuous synaptic dynamics and numerically simulating the networks, we show that the network with interneurons is more robust to initialization than the network with direct recurrent connections in the sense that the convergence time for the synaptic dynamics in the network with interneurons (resp. direct recurrent connections) scales logarithmically (resp. linearly) with the spectrum of their initialization. Our results suggest that interneurons are computationally useful for rapid adaptation to changing input statistics. Interestingly, the network with interneurons is an overparameterized solution of the whitening objective for the network with direct recurrent connections, so our results can be viewed as a recurrent neural network analogue of the implicit acceleration phenomenon observed in overparameterized feedforward linear networks.

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NeurIPS Conference 2022 Conference Paper

Biological Learning of Irreducible Representations of Commuting Transformations

Alexander Genkin
David Lipshutz
Siavash Golkar
Tiberiu Tesileanu
Dmitri Chklovskii

A longstanding challenge in neuroscience is to understand neural mechanisms underlying the brain’s remarkable ability to learn and detect transformations of objects due to motion. Translations and rotations of images can be viewed as orthogonal transformations in the space of pixel intensity vectors. Every orthogonal transformation can be decomposed into rotations within irreducible two-dimensional subspaces (or representations). For sets of commuting transformations, known as toroidal groups, Cohen and Welling proposed a mathematical framework for learning the irreducible representations. We explore the possibility that the brain also learns irreducible representations using a biologically plausible learning mechanism. The first is based on SVD of the anti-symmetrized outer product of the vectors representing consecutive images and is implemented by a single-layer neural network. The second is based on PCA of the difference between consecutive frames and is implemented in a two-layer network but with greater biological plausibility. Both networks learn image rotations (replicating Cohen and Welling’s results) as well as translations. It would be interesting to search for the proposed networks in nascent connectomics and physiology datasets.

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NeurIPS Conference 2020 Conference Paper

A Biologically Plausible Neural Network for Slow Feature Analysis

David Lipshutz
Charles Windolf
Siavash Golkar
Dmitri Chklovskii

Learning latent features from time series data is an important problem in both machine learning and brain function. One approach, called Slow Feature Analysis (SFA), leverages the slowness of many salient features relative to the rapidly varying input signals. Furthermore, when trained on naturalistic stimuli, SFA reproduces interesting properties of cells in the primary visual cortex and hippocampus, suggesting that the brain uses temporal slowness as a computational principle for learning latent features. However, despite the potential relevance of SFA for modeling brain function, there is currently no SFA algorithm with a biologically plausible neural network implementation, by which we mean an algorithm operates in the online setting and can be mapped onto a neural network with local synaptic updates. In this work, starting from an SFA objective, we derive an SFA algorithm, called Bio-SFA, with a biologically plausible neural network implementation. We validate Bio-SFA on naturalistic stimuli.

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NeurIPS Conference 2020 Conference Paper

A simple normative network approximates local non-Hebbian learning in the cortex

Siavash Golkar
David Lipshutz
Yanis Bahroun
Anirvan Sengupta
Dmitri Chklovskii

To guide behavior, the brain extracts relevant features from high-dimensional data streamed by sensory organs. Neuroscience experiments demonstrate that the processing of sensory inputs by cortical neurons is modulated by instructive signals which provide context and task-relevant information. Here, adopting a normative approach, we model these instructive signals as supervisory inputs guiding the projection of the feedforward data. Mathematically, we start with a family of Reduced-Rank Regression (RRR) objective functions which include Reduced Rank (minimum) Mean Square Error (RRMSE) and Canonical Correlation Analysis (CCA), and derive novel offline and online optimization algorithms, which we call Bio-RRR. The online algorithms can be implemented by neural networks whose synaptic learning rules resemble calcium plateau potential dependent plasticity observed in the cortex. We detail how, in our model, the calcium plateau potential can be interpreted as a backpropagating error signal. We demonstrate that, despite relying exclusively on biologically plausible local learning rules, our algorithms perform competitively with existing implementations of RRMSE and CCA.

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