Author name cluster

Chandan Reddy

Possible papers associated with this exact author name in Arrow. This page groups case-insensitive exact name matches and is not a full identity disambiguation profile.

5 papers

1 author row

NeurIPS Conference 2023 Conference Paper

Hyperbolic Graph Neural Networks at Scale: A Meta Learning Approach

Nurendra Choudhary
Nikhil Rao
Chandan Reddy

The progress in hyperbolic neural networks (HNNs) research is hindered by their absence of inductive bias mechanisms, which are essential for generalizing to new tasks and facilitating scalable learning over large datasets. In this paper, we aim to alleviate these issues by learning generalizable inductive biases from the nodes’ local subgraph and transfer them for faster learning over new subgraphs with a disjoint set of nodes, edges, and labels in a few-shot setting. We introduce a novel method, Hyperbolic GRAph Meta Learner (H-GRAM), that, for the tasks of node classification and link prediction, learns transferable information from a set of support local subgraphs in the form of hyperbolic meta gradients and label hyperbolic protonets to enable faster learning over a query set of new tasks dealing with disjoint subgraphs. Furthermore, we show that an extension of our meta-learning framework also mitigates the scalability challenges seen in HNNs faced by existing approaches. Our comparative analysis shows that H-GRAM effectively learns and transfers information in multiple challenging few-shot settings compared to other state-of-the-art baselines. Additionally, we demonstrate that, unlike standard HNNs, our approach is able to scale over large graph datasets and improve performance over its Euclidean counterparts.

PDF Details

NeurIPS Conference 2023 Conference Paper

Towards Semi-Structured Automatic ICD Coding via Tree-based Contrastive Learning

Chang Lu
Chandan Reddy
Ping Wang
Yue Ning

Automatic coding of International Classification of Diseases (ICD) is a multi-label text categorization task that involves extracting disease or procedure codes from clinical notes. Despite the application of state-of-the-art natural language processing (NLP) techniques, there are still challenges including limited availability of data due to privacy constraints and the high variability of clinical notes caused by different writing habits of medical professionals and various pathological features of patients. In this work, we investigate the semi-structured nature of clinical notes and propose an automatic algorithm to segment them into sections. To address the variability issues in existing ICD coding models with limited data, we introduce a contrastive pre-training approach on sections using a soft multi-label similarity metric based on tree edit distance. Additionally, we design a masked section training strategy to enable ICD coding models to locate sections related to ICD codes. Extensive experimental results demonstrate that our proposed training strategies effectively enhance the performance of existing ICD coding methods.

PDF Details

NeurIPS Conference 2023 Conference Paper

Transformer-based Planning for Symbolic Regression

Parshin Shojaee
Kazem Meidani
Amir Barati Farimani
Chandan Reddy

Symbolic regression (SR) is a challenging task in machine learning that involves finding a mathematical expression for a function based on its values. Recent advancements in SR have demonstrated the effectiveness of pre-trained transformer models in generating equations as sequences, leveraging large-scale pre-training on synthetic datasets and offering notable advantages in terms of inference time over classical Genetic Programming (GP) methods. However, these models primarily rely on supervised pre-training objectives borrowed from text generation and overlook equation discovery goals like accuracy and complexity. To address this, we propose TPSR, a Transformer-based Planning strategy for Symbolic Regression that incorporates Monte Carlo Tree Search planning algorithm into the transformer decoding process. Unlike conventional decoding strategies, TPSR enables the integration of non-differentiable equation verification feedback, such as fitting accuracy and complexity, as external sources of knowledge into the transformer equation generation process. Extensive experiments on various datasets show that our approach outperforms state-of-the-art methods, enhancing the model's fitting-complexity trade-off, extrapolation abilities, and robustness to noise.

PDF Details

NeurIPS Conference 2021 Conference Paper

Probabilistic Entity Representation Model for Reasoning over Knowledge Graphs

Nurendra Choudhary
Nikhil Rao
Sumeet Katariya
Karthik Subbian
Chandan Reddy

Logical reasoning over Knowledge Graphs (KGs) is a fundamental technique that can provide an efficient querying mechanism over large and incomplete databases. Current approaches employ spatial geometries such as boxes to learn query representations that encompass the answer entities and model the logical operations of projection and intersection. However, their geometry is restrictive and leads to non-smooth strict boundaries, which further results in ambiguous answer entities. Furthermore, previous works propose transformation tricks to handle unions which results in non-closure and, thus, cannot be chained in a stream. In this paper, we propose a Probabilistic Entity Representation Model (PERM) to encode entities as a Multivariate Gaussian density with mean and covariance parameters to capture its semantic position and smooth decision boundary, respectively. Additionally, we also define the closed logical operations of projection, intersection, and union that can be aggregated using an end-to-end objective function. On the logical query reasoning problem, we demonstrate that the proposed PERM significantly outperforms the state-of-the-art methods on various public benchmark KG datasets on standard evaluation metrics. We also evaluate PERM’s competence on a COVID-19 drug-repurposing case study and show that our proposed work is able to recommend drugs with substantially better F1 than current methods. Finally, we demonstrate the working of our PERM’s query answering process through a low-dimensional visualization of the Gaussian representations.

PDF Details

AAAI Conference 2017 Conference Paper

PIVE: Per-Iteration Visualization Environment for Real-Time Interactions with Dimension Reduction and Clustering

Hannah Kim
Jaegul Choo
Changhyun Lee
Hanseung Lee
Chandan Reddy
Haesun Park

One of the key advantages of visual analytics is its capability to leverage both humans’s visual perception and the power of computing. A big obstacle in integrating machine learning with visual analytics is its high computing cost. To tackle this problem, this paper presents PIVE (Per-Iteration Visualization Environment) that supports real-time interactive visualization with machine learning. By immediately visualizing the intermediate results from algorithm iterations, PIVE enables users to quickly grasp insights and interact with the intermediate output, which then affects subsequent algorithm iterations. In addition, we propose a widely-applicable interaction methodology that allows efﬁcient incorporation of user feedback into virtually any iterative computational method without introducing additional computational cost. We demonstrate the application of PIVE for various dimension reduction algorithms such as multidimensional scaling and t-SNE and clustering and topic modeling algorithms such as k-means and latent Dirichlet allocation.

PDF Details