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Cesar Caiafa

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3 papers

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NeurIPS Conference 2019 Conference Paper

Learning Macroscopic Brain Connectomes via Group-Sparse Factorization

Farzane Aminmansour
Andrew Patterson
Lei Le
Yisu Peng
Daniel Mitchell
Franco Pestilli
Cesar Caiafa
Russell Greiner

Mapping structural brain connectomes for living human brains typically requires expert analysis and rule-based models on diffusion-weighted magnetic resonance imaging. A data-driven approach, however, could overcome limitations in such rule-based approaches and improve precision mappings for individuals. In this work, we explore a framework that facilitates applying learning algorithms to automatically extract brain connectomes. Using a tensor encoding, we design an objective with a group-regularizer that prefers biologically plausible fascicle structure. We show that the objective is convex and has unique solutions, ensuring identifiable connectomes for an individual. We develop an efficient optimization strategy for this extremely high-dimensional sparse problem, by reducing the number of parameters using a greedy algorithm designed specifically for the problem. We show that this greedy algorithm significantly improves on a standard greedy algorithm, called Orthogonal Matching Pursuit. We conclude with an analysis of the solutions found by our method, showing we can accurately reconstruct the diffusion information while maintaining contiguous fascicles with smooth direction changes.

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NeurIPS Conference 2017 Conference Paper

Unified representation of tractography and diffusion-weighted MRI data using sparse multidimensional arrays

Cesar Caiafa
Olaf Sporns
Andrew Saykin
Franco Pestilli

Recently, linear formulations and convex optimization methods have been proposed to predict diffusion-weighted Magnetic Resonance Imaging (dMRI) data given estimates of brain connections generated using tractography algorithms. The size of the linear models comprising such methods grows with both dMRI data and connectome resolution, and can become very large when applied to modern data. In this paper, we introduce a method to encode dMRI signals and large connectomes, i. e. , those that range from hundreds of thousands to millions of fascicles (bundles of neuronal axons), by using a sparse tensor decomposition. We show that this tensor decomposition accurately approximates the Linear Fascicle Evaluation (LiFE) model, one of the recently developed linear models. We provide a theoretical analysis of the accuracy of the sparse decomposed model, LiFESD, and demonstrate that it can reduce the size of the model significantly. Also, we develop algorithms to implement the optimisation solver using the tensor representation in an efficient way.

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NeurIPS Conference 2011 Conference Paper

Multilinear Subspace Regression: An Orthogonal Tensor Decomposition Approach

Qibin Zhao
Cesar Caiafa
Danilo Mandic
Liqing Zhang
Tonio Ball
Andreas Schulze-Bonhage
Andrzej Cichocki

A multilinear subspace regression model based on so called latent variable decomposition is introduced. Unlike standard regression methods which typically employ matrix (2D) data representations followed by vector subspace transformations, the proposed approach uses tensor subspace transformations to model common latent variables across both the independent and dependent data. The proposed approach aims to maximize the correlation between the so derived latent variables and is shown to be suitable for the prediction of multidimensional dependent data from multidimensional independent data, where for the estimation of the latent variables we introduce an algorithm based on Multilinear Singular Value Decomposition (MSVD) on a specially defined cross-covariance tensor. It is next shown that in this way we are also able to unify the existing Partial Least Squares (PLS) and N-way PLS regression algorithms within the same framework. Simulations on benchmark synthetic data confirm the advantages of the proposed approach, in terms of its predictive ability and robustness, especially for small sample sizes. The potential of the proposed technique is further illustrated on a real world task of the decoding of human intracranial electrocorticogram (ECoG) from a simultaneously recorded scalp electroencephalograph (EEG).

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