Author name cluster

Byung-Jun Yoon

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9 papers

2 author rows

NeurIPS Conference 2025 Conference Paper

A Plug-and-Play Query Synthesis Active Learning Framework for Neural PDE Solvers

Zhiyuan Wang
Jinwoo Go
Byung-Jun Yoon
Nathan Urban
Xiaoning Qian

In recent developments in scientific machine learning (SciML), neural surrogate solvers for partial differential equations (PDEs) have become powerful tools for accelerating scientific computation for various science and engineering applications. However, training neural PDE solvers often demands a large amount of high-fidelity PDE simulation data, which are expensive to generate. Active learning (AL) offers a promising solution by adaptively selecting training data from the PDE settings--including parameters, initial and boundary conditions--that are expected to be most informative to help reduce this data burden. In this work, we introduce PaPQS, a Plug-and-Play Query Synthesis AL framework that synthesizes informative PDE settings directly in the continuous design space. PaPQS optimizes the Expected Information Gain (EIG) while encouraging batch diversity, enabling model-aware exploration of the design space via backpropagation through the neural PDE solution trajectories. The framework is applicable to general PDE systems and surrogate architectures, and can be seamlessly integrated with existing AL strategies. Extensive experiments across different PDE systems demonstrate that our AL framework, PaPQS, consistently improves sample efficiency over existing AL baselines.

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NeurIPS Conference 2025 Conference Paper

C-LoRA: Contextual Low-Rank Adaptation for Uncertainty Estimation in Large Language Models

Amir Hossein Rahmati
Sanket Jantre
Weifeng Zhang
Yucheng Wang
Byung-Jun Yoon
Nathan Urban
Xiaoning Qian

Low-Rank Adaptation (LoRA) offers a cost-effective solution for fine-tuning large language models (LLMs), but it often produces overconfident predictions in data-scarce few-shot settings. To address this issue, several classical statistical learning approaches have been repurposed for scalable uncertainty-aware LoRA fine-tuning. However, these approaches neglect how input characteristics affect the predictive uncertainty estimates. To address this limitation, we propose Contextual Low-Rank Adaptation ( C-LoRA ) as a novel uncertainty-aware and parameter efficient fine-tuning approach, by developing new lightweight LoRA modules contextualized to each input data sample to dynamically adapt uncertainty estimates. Incorporating data-driven contexts into the parameter posteriors, C-LoRA mitigates overfitting, achieves well-calibrated uncertainties, and yields robust predictions. Extensive experiments on LLaMA2-7B models demonstrate that C-LoRA consistently outperforms the state-of-the-art uncertainty-aware LoRA methods in both uncertainty quantification and model generalization. Ablation studies further confirm the critical role of our contextual modules in capturing sample-specific uncertainties. C-LoRA sets a new standard for robust, uncertainty-aware LLM fine-tuning in few-shot regimes. Although our experiments are limited to 7B models, our method is architecture-agnostic and, in principle, applies beyond this scale; studying its scaling to larger models remains an open problem. Our code is available at https: //github. com/ahra99/c_lora.

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ICLR Conference 2025 Conference Paper

Pareto Prompt Optimization

Guang Zhao
Byung-Jun Yoon
Gilchan Park
Shantenu Jha
Shinjae Yoo
Xiaoning Qian

Natural language prompt optimization, or prompt engineering, has emerged as a powerful technique to unlock the potential of Large Language Models (LLMs) for various tasks. While existing methods primarily focus on maximizing a single task-specific performance metric for LLM outputs, real-world applications often require considering trade-offs between multiple objectives. In this work, we address this limitation by proposing an effective technique for multi-objective prompt optimization for LLMs. Specifically, we propose **ParetoPrompt**, a reinforcement learning~(RL) method that leverages dominance relationships between prompts to derive a policy model for prompts optimization using preference-based loss functions. By leveraging multi-objective dominance relationships, ParetoPrompt enables efficient exploration of the entire Pareto front without the need for a predefined scalarization of multiple objectives. Our experimental results show that ParetoPrompt consistently outperforms existing algorithms that use specific objective values. ParetoPrompt also yields robust performances when the objective metrics differ between training and testing.

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ICML Conference 2024 Conference Paper

Hierarchical Neural Operator Transformer with Learnable Frequency-aware Loss Prior for Arbitrary-scale Super-resolution

Xihaier Luo
Xiaoning Qian
Byung-Jun Yoon

In this work, we present an arbitrary-scale super-resolution (SR) method to enhance the resolution of scientific data, which often involves complex challenges such as continuity, multi-scale physics, and the intricacies of high-frequency signals. Grounded in operator learning, the proposed method is resolution-invariant. The core of our model is a hierarchical neural operator that leverages a Galerkin-type self-attention mechanism, enabling efficient learning of mappings between function spaces. Sinc filters are used to facilitate the information transfer across different levels in the hierarchy, thereby ensuring representation equivalence in the proposed neural operator. Additionally, we introduce a learnable prior structure that is derived from the spectral resizing of the input data. This loss prior is model-agnostic and is designed to dynamically adjust the weighting of pixel contributions, thereby balancing gradients effectively across the model. We conduct extensive experiments on diverse datasets from different domains and demonstrate consistent improvements compared to strong baselines, which consist of various state-of-the-art SR methods.

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UAI Conference 2024 Conference Paper

Multi-fidelity Bayesian Optimization with Multiple Information Sources of Input-dependent Fidelity

Mingzhou Fan
Byung-Jun Yoon
Edward R. Dougherty
Nathan M. Urban
Francis J. Alexander
Raymundo Arróyave
Xiaoning Qian

By querying approximate surrogate models of different fidelity as available information sources, Multi-Fidelity Bayesian Optimization (MFBO) aims at optimizing unknown functions that are costly if not infeasible to evaluate. Existing MFBO methods often assume that approximate surrogates have consistently high/low fidelity across the input domain. However, approximate evaluations from the same surrogate can have different fidelity at different input regions due to data availability and model constraints, especially when considering machine learning surrogates. In this work, we investigate MFBO when multi-fidelity approximations have input-dependent fidelity. By explicitly capturing input dependency for multi-fidelity queries in Gaussian Process (GP), our new input-dependent MFBO (iMFBO) with learnable noise models better captures the fidelity of each information source in an intuitive way. We further design a new acquisition function for iMFBO and prove that the queries selected by iMFBO have higher quality than those by naive MFBO methods, with the derived sub-linear regret bound. Experiments on both synthetic and real-world data demonstrate its superior empirical performance.

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EAAI Journal 2023 Journal Article

Neural message-passing for objective-based uncertainty quantification and optimal experimental design

Qihua Chen
Xuejin Chen
Hyun-Myung Woo
Byung-Jun Yoon

Various real-world scientific applications involve the mathematical modeling of complex uncertain systems with numerous unknown parameters. Accurate parameter estimation is often practically infeasible in such systems, as the available training data may be insufficient and the cost of acquiring additional data may be high. In such cases, based on a Bayesian paradigm, we can design robust operators retaining the best overall performance across all possible models and design optimal experiments that can effectively reduce uncertainty to enhance the performance of such operators maximally. While objective-based uncertainty quantification (objective-UQ) based on MOCU (mean objective cost of uncertainty) provides an effective means for quantifying uncertainty in complex systems, the high computational cost of estimating MOCU has been a challenge in applying it to real-world scientific/engineering problems. In this work, we propose a novel scheme to reduce the computational cost for objective-UQ via MOCU based on a data-driven approach. We adopt a neural message-passing model for surrogate modeling, incorporating a novel axiomatic constraint loss that penalizes an increase in the estimated system uncertainty. As an illustrative example, we consider the optimal experimental design (OED) problem for uncertain Kuramoto models, where the goal is to predict the experiments that can most effectively enhance robust synchronization performance through uncertainty reduction. We show that our proposed approach can accelerate MOCU-based OED by four to five orders of magnitude, without any visible performance loss compared to the state-of-the-art. The proposed approach applies to general OED tasks, beyond the Kuramoto model.

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NeurIPS Conference 2021 Conference Paper

Efficient Active Learning for Gaussian Process Classification by Error Reduction

Guang Zhao
Edward Dougherty
Byung-Jun Yoon
Francis Alexander
Xiaoning Qian

Active learning sequentially selects the best instance for labeling by optimizing an acquisition function to enhance data/label efficiency. The selection can be either from a discrete instance set (pool-based scenario) or a continuous instance space (query synthesis scenario). In this work, we study both active learning scenarios for Gaussian Process Classification (GPC). The existing active learning strategies that maximize the Estimated Error Reduction (EER) aim at reducing the classification error after training with the new acquired instance in a one-step-look-ahead manner. The computation of EER-based acquisition functions is typically prohibitive as it requires retraining the GPC with every new query. Moreover, as the EER is not smooth, it can not be combined with gradient-based optimization techniques to efficiently explore the continuous instance space for query synthesis. To overcome these critical limitations, we develop computationally efficient algorithms for EER-based active learning with GPC. We derive the joint predictive distribution of label pairs as a one-dimensional integral, as a result of which the computation of the acquisition function avoids retraining the GPC for each query, remarkably reducing the computational overhead. We also derive the gradient chain rule to efficiently calculate the gradient of the acquisition function, which leads to the first query synthesis active learning algorithm implementing EER-based strategies. Our experiments clearly demonstrate the computational efficiency of the proposed algorithms. We also benchmark our algorithms on both synthetic and real-world datasets, which show superior performance in terms of sampling efficiency compared to the existing state-of-the-art algorithms.

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AAAI Conference 2021 Conference Paper

Physics-constrained Automatic Feature Engineering for Predictive Modeling in Materials Science

Ziyu Xiang
Mingzhou Fan
Guillermo Vázquez Tovar
William Trehern
Byung-Jun Yoon
Xiaofeng Qian
Raymundo Arroyave
Xiaoning Qian

Automatic Feature Engineering (AFE) aims to extract useful knowledge for interpretable predictions given data for the machine learning tasks. Here, we develop AFE to extract dependency relationships that can be interpreted with functional formulas to discover physics meaning or new hypotheses for the problems of interest. We focus on materials science applications, where interpretable predictive modeling may provide principled understanding of materials systems and guide new materials discovery. It is often computationally prohibitive to exhaust all the potential relationships to construct and search the whole feature space to identify interpretable and predictive features. We develop and evaluate new AFE strategies by exploring a feature generation tree (FGT) with deep Qnetwork (DQN) for scalable and efficient exploration policies. The developed DQN-based AFE strategies are benchmarked with the existing AFE methods on several materials science datasets.

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ICLR Conference 2021 Conference Paper

Uncertainty-aware Active Learning for Optimal Bayesian Classifier

Guang Zhao
Edward R. Dougherty
Byung-Jun Yoon
Francis J. Alexander
Xiaoning Qian

For pool-based active learning, in each iteration a candidate training sample is chosen for labeling by optimizing an acquisition function. In Bayesian classification, expected Loss Reduction~(ELR) methods maximize the expected reduction in the classification error given a new labeled candidate based on a one-step-look-ahead strategy. ELR is the optimal strategy with a single query; however, since such myopic strategies cannot identify the long-term effect of a query on the classification error, ELR may get stuck before reaching the optimal classifier. In this paper, inspired by the mean objective cost of uncertainty (MOCU), a metric quantifying the uncertainty directly affecting the classification error, we propose an acquisition function based on a weighted form of MOCU. Similar to ELR, the proposed method focuses on the reduction of the uncertainty that pertains to the classification error. But unlike any other existing scheme, it provides the critical advantage that the resulting Bayesian active learning algorithm guarantees convergence to the optimal classifier of the true model. We demonstrate its performance with both synthetic and real-world datasets.

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