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B.W. Van Dijk

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9 papers
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9

YNIMG Journal 2014 Journal Article

Functional brain network analysis using minimum spanning trees in Multiple Sclerosis: An MEG source-space study

  • P. Tewarie
  • A. Hillebrand
  • M.M. Schoonheim
  • B.W. Van Dijk
  • J.J.G. Geurts
  • F. Barkhof
  • C.H. Polman
  • C.J. Stam

Cognitive dysfunction in Multiple Sclerosis (MS) is closely related to altered functional brain network topology. Conventional network analyses to compare groups are hampered by differences in network size, density and suffer from normalization problems. We therefore computed the Minimum Spanning Tree (MST), a sub-graph of the original network, to counter these problems. We hypothesize that functional network changes analysed with MSTs are important for understanding cognitive changes in MS and that changes in MST topology also represent changes in the critical backbone of the original brain networks. Here, resting-state magnetoencephalography (MEG) recordings from 21 early MS patients and 17 age-, gender-, and education-matched controls were projected onto atlas-based regions-of-interest (ROIs) using beamforming. The phase lag index was applied to compute functional connectivity between regions, from which a graph and subsequently the MST was constructed. Results showed lower global integration in the alpha2 (10–13Hz) and beta (13–30Hz) bands in MS patients, whereas higher global integration was found in the theta band. Changes were most pronounced in the alpha2 band where a loss of hierarchical structure was observed, which was associated with poorer cognitive performance. Finally, the MST in MS patients as well as in healthy controls may represent the critical backbone of the original network. Together, these findings indicate that MST network analyses are able to detect network changes in MS patients, which may correspond to changes in the core of functional brain networks. Moreover, these changes, such as a loss of hierarchical structure, are related to cognitive performance in MS.

YNIMG Journal 2014 Journal Article

Structural degree predicts functional network connectivity: A multimodal resting-state fMRI and MEG study

  • P. Tewarie
  • A. Hillebrand
  • E. van Dellen
  • M.M. Schoonheim
  • F. Barkhof
  • C.H. Polman
  • C. Beaulieu
  • G. Gong

Communication between neuronal populations in the human brain is characterized by complex functional interactions across time and space. Recent studies have demonstrated that these functional interactions depend on the underlying structural connections at an aggregate level. Multiple imaging modalities can be used to investigate the relation between the structural connections between brain regions and their functional interactions at multiple timescales. We investigated if consistent modality-independent functional interactions take place between brain regions, and whether these can be accounted for by underlying structural properties. We used functional MRI (fMRI) and magnetoencephalography (MEG) recordings from a population of healthy adults together with a previously described structural network. A high overlap in resting-state functional networks was found in fMRI and especially alpha band MEG recordings. This overlap was characterized by a strongly interconnected functional core network in temporo-posterior brain regions. Anatomically realistically coupled neural mass models revealed that this strongly interconnected functional network emerges near the threshold for global synchronization. Most importantly, this functional core network could be explained by a trade-off between the product of the degrees of structurally-connected regions and the Euclidean distance between them. For both fMRI and MEG, the product of the degrees of connected regions was the most important predictor for functional network connectivity. Therefore, irrespective of the modality, these results indicate that a functional core network in the human brain is especially shaped by communication between high degree nodes of the structural network.

YNIMG Journal 2012 Journal Article

Optimizing parameter choice for FSL-Brain Extraction Tool (BET) on 3D T1 images in multiple sclerosis

  • V. Popescu
  • M. Battaglini
  • W.S. Hoogstrate
  • S.C.J. Verfaillie
  • I.C. Sluimer
  • R.A. van Schijndel
  • B.W. Van Dijk
  • K.S. Cover

Background Brain atrophy studies often use FSL-BET (Brain Extraction Tool) as the first step of image processing. Default BET does not always give satisfactory results on 3DT1 MR images, which negatively impacts atrophy measurements. Finding the right alternative BET settings can be a difficult and time-consuming task, which can introduce unwanted variability. Aim To systematically analyze the performance of BET in images of MS patients by varying its parameters and options combinations, and quantitatively comparing its results to a manual gold standard. Methods Images from 159 MS patients were selected from different MAGNIMS consortium centers, and 16 different 3DT1 acquisition protocols at 1. 5T or 3T. Before running BET, one of three pre-processing pipelines was applied: (1) no pre-processing, (2) removal of neck slices, or (3) additional N3 inhomogeneity correction. Then BET was applied, systematically varying the fractional intensity threshold (the “f” parameter) and with either one of the main BET options (“B” — bias field correction and neck cleanup, “R” — robust brain center estimation, or “S” — eye and optic nerve cleanup) or none. For comparison, intracranial cavity masks were manually created for all image volumes. FSL-FAST (FMRIB's Automated Segmentation Tool) tissue-type segmentation was run on all BET output images and on the image volumes masked with the manual intracranial cavity masks (thus creating the gold-standard tissue masks). The resulting brain tissue masks were quantitatively compared to the gold standard using Dice overlap coefficient (DOC). Normalized brain volumes (NBV) were calculated with SIENAX. NBV values obtained using for SIENAX other BET settings than default were compared to gold standard NBV with the paired t-test. Results The parameter/preprocessing/options combinations resulted in 20, 988 BET runs. The median DOC for default BET (f=0. 5, g=0) was 0. 913 (range 0. 321–0. 977) across all 159 native scans. For all acquisition protocols, brain extraction was substantially improved for lower values of “f” than the default value. Using native images, optimum BET performance was observed for f=0. 2 with option “B”, giving median DOC=0. 979 (range 0. 867–0. 994). Using neck removal before BET, optimum BET performance was observed for f=0. 1 with option “B”, giving median DOC 0. 983 (range 0. 844–0. 996). Using the above BET-options for SIENAX instead of default, the NBV values obtained from images after neck removal with f=0. 1 and option “B” did not differ statistically from NBV values obtained with gold-standard. Conclusion Although default BET performs reasonably well on most 3DT1 images of MS patients, the performance can be improved substantially. The removal of the neck slices, either externally or within BET, has a marked positive effect on the brain extraction quality. BET option “B” with f=0. 1 after removal of the neck slices seems to work best for all acquisition protocols.

YNIMG Journal 2011 Journal Article

Dynamics underlying spontaneous human alpha oscillations: A data-driven approach

  • R. Hindriks
  • F. Bijma
  • B.W. Van Dijk
  • Y.D. van der Werf
  • E.J.W. Van Someren
  • A.W. van der Vaart

Although the cognitive and clinical correlates of spontaneous human alpha oscillations as recorded with electroencephalography (EEG) or magnetoencephalography (MEG) are well documented, the dynamics underlying these oscillations is still a matter of debate. This study proposes a data-driven method to reveal the dynamics of these oscillations. It demonstrates that spontaneous human alpha oscillations as recorded with MEG can be viewed as noise-perturbed damped harmonic oscillations. This provides evidence for the hypothesis that these oscillations reflect filtered noise and hence do not possess limit-cycle dynamics. To illustrate the use of the model, we apply it to two data-sets in which a decrease in alpha power can be observed across conditions. The associated differences in the estimated model parameters show that observed decreases in alpha power are associated with different kinds of changes in the dynamics. Thus, the model parameters are useful dynamical biomarkers for spontaneous human alpha oscillations.

YNIMG Journal 2010 Journal Article

Cortico-spinal synchronization reflects changes in performance when learning a complex bimanual task

  • S. Houweling
  • B.W. Van Dijk
  • P.J. Beek
  • A. Daffertshofer

Motor performance is accompanied by neural activity in various cortical and sub-cortical areas. This intricate network has to be delicately orchestrated. We analyzed the role of beta synchronization in motor learning using magneto-encephalography combined with electromyography. Cortico-spinal synchronization in the beta band was found to be of particular importance in establishing bimanual movement patterns in the context of a 3: 2 polyrhythmic (isometric) force production task. Its dynamics correlated highly with the learning of this complex bimanual motor skill. We submit that the cortical dynamics entrains the spinal motor system by which cortico-spinal beta synchrony serves higher-level motor control functions as primary means of information transfer along the neural axis.

YNIMG Journal 2008 Journal Article

Neural changes induced by learning a challenging perceptual-motor task

  • S. Houweling
  • A. Daffertshofer
  • B.W. Van Dijk
  • P.J. Beek

We studied the neural changes accompanying the learning of a perceptual-motor task involving polyrhythmic bimanual force production. Motor learning was characterized by an increase in stability of performance. To assess after-effects in the corresponding neural network, magnetoencophalographic and electromyographic signals were recorded and analyzed in terms of (event-related) amplitude changes and synchronization patterns. The topology of the network was first identified using a beamformer analysis, which revealed differential effects of activation in cortical areas and cerebellar hemispheres. We found event-related (de-)synchronization of β-activity in bilateral cortical motor areas and α-modulations in the cerebellum. The α-modulation increased after learning and, simultaneously, the bilateral M1 coupling increased around the movement frequency reflecting improved motor timing. Furthermore, the inter-hemispheric γ-synchronization between primary motor areas decreased, which may reflect a reduced attentional demand after learning.

YNIMG Journal 2006 Journal Article

Magnetoencephalographic evaluation of resting-state functional connectivity in Alzheimer's disease

  • C.J. Stam
  • B.F. Jones
  • I. Manshanden
  • A.M. van Cappellen van Walsum
  • T. Montez
  • J.P.A. Verbunt
  • J.C. de Munck
  • B.W. Van Dijk

Statistical interdependencies between magnetoencephalographic signals recorded over different brain regions may reflect the functional connectivity of the resting-state networks. We investigated topographic characteristics of disturbed resting-state networks in Alzheimer's disease patients in different frequency bands. Whole-head 151-channel MEG was recorded in 18 Alzheimer patients (mean age 72. 1 years, SD 5. 6; 11 males) and 18 healthy controls (mean age 69. 1 years, SD 6. 8; 7 males) during a no-task eyes-closed resting state. Pair-wise interdependencies of MEG signals were computed in six frequency bands (delta, theta, alpha1, alpha2, beta and gamma) with the synchronization likelihood (a nonlinear measure) and coherence and grouped into long distance (intra- and interhemispheric) and short distance interactions. In the alpha1 and beta band, Alzheimer patients showed a loss of long distance intrahemispheric interactions, with a focus on left fronto-temporal/parietal connections. Functional connectivity was increased in Alzheimer patients locally in the theta band (centro-parietal regions) and the beta and gamma band (occipito-parietal regions). In the Alzheimer group, positive correlations were found between alpha1, alpha2 and beta band synchronization likelihood and MMSE score. Resting-state functional connectivity in Alzheimer's disease is characterized by specific changes of long and short distance interactions in the theta, alpha1, beta and gamma bands. These changes may reflect loss of anatomical connections and/or reduced central cholinergic activity and could underlie part of the cognitive impairment.

YNIMG Journal 2006 Journal Article

Synchronization likelihood with explicit time-frequency priors

  • T. Montez
  • K. Linkenkaer-Hansen
  • B.W. Van Dijk
  • C.J. Stam

Cognitive processing requires integration of information processed simultaneously in spatially distinct areas of the brain. The influence that two brain areas exert on each others activity is usually governed by an unknown function, which is likely to have nonlinear terms. If the functional relationship between activities in different areas is dominated by the nonlinear terms, linear measures of correlation may not detect the statistical interdependency satisfactorily. Therefore, algorithms for detecting nonlinear dependencies may prove invaluable for characterizing the functional coupling in certain neuronal systems, conditions or pathologies. Synchronization likelihood (SL) is a method based on the concept of generalized synchronization and detects nonlinear and linear dependencies between two signals (Stam, C. J. , van Dijk, B. W. , 2002. Synchronization likelihood: An unbiased measure of generalized synchronization in multivariate data sets. Physica D, 163: 236–241.). SL relies on the detection of simultaneously occurring patterns, which can be complex and widely different in the two signals. Clinical studies applying SL to electro- or magnetoencephalography (EEG/MEG) signals have shown promising results. In previous implementations of the algorithm, however, a number of parameters have lacked a rigorous definition with respect to the time-frequency characteristics of the underlying physiological processes. Here we introduce a rationale for choosing these parameters as a function of the time-frequency content of the patterns of interest. The number of parameters that can be arbitrarily chosen by the user of the SL algorithm is thereby decreased from six to two. Empirical evidence for the advantages of our proposal is given by an application to EEG data of an epileptic seizure and simulations of two unidirectionally coupled Hénon systems.