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Bowen Ding

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4 papers

2 author rows

NeurIPS Conference 2025 Conference Paper

CPathAgent: An Agent-based Foundation Model for Interpretable High-Resolution Pathology Image Analysis Mimicking Pathologists' Diagnostic Logic

Yuxuan Sun
Yixuan Si
Chenglu Zhu
Kai Zhang
Zhongyi Shui
Bowen Ding
Tao Lin
Lin Yang

Recent advances in computational pathology have led to the emergence of numerous foundation models. These models typically rely on general-purpose encoders with multi-instance learning for whole slide image (WSI) classification or apply multimodal approaches to generate reports directly from images. However, these models cannot emulate the diagnostic approach of pathologists, who systematically examine slides at low magnification to obtain an overview before progressively zooming in on suspicious regions to formulate comprehensive diagnoses. Instead, existing models directly output final diagnoses without revealing the underlying reasoning process. To address this gap, we introduce CPathAgent, an innovative agent-based approach that mimics pathologists' diagnostic workflow by autonomously navigating across WSI through zoom-in/out and move operations based on observed visual features, thereby generating substantially more transparent and interpretable diagnostic summaries. To achieve this, we develop a multi-stage training strategy that unifies patch-level, region-level, and WSI-level capabilities within a single model, which is essential for replicating how pathologists understand and reason across diverse image scales. Additionally, we construct PathMMU-HR², the first expert-validated benchmark for large region analysis. This represents a critical intermediate scale between patches and whole slides, reflecting a key clinical reality where pathologists typically examine several key large regions rather than entire slides at once. Extensive experiments demonstrate that CPathAgent consistently outperforms existing approaches across benchmarks at three different image scales, validating the effectiveness of our agent-based diagnostic approach and highlighting a promising direction for computational pathology.

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AAAI Conference 2025 Conference Paper

Enhancing Uncertainty Modeling with Semantic Graph for Hallucination Detection

Kedi Chen
Qin Chen
Jie Zhou
Xinqi Tao
Bowen Ding
Jingwen Xie
Mingchen Xie
Peilong Li

Large Language Models (LLMs) are prone to hallucination with non-factual or unfaithful statements, which undermines the applications in real-world scenarios. Recent researches focus on uncertainty-based hallucination detection, which utilizes the output probability of LLMs for uncertainty calculation and does not rely on external knowledge or frequent sampling from LLMs. Whereas, most approaches merely consider the uncertainty of each independent token, while the intricate semantic relations among tokens and sentences are not well studied, which limits the detection of hallucination that spans over multiple tokens and sentences in the passage. In this paper, we propose a method to enhance uncertainty modeling with semantic graph for hallucination detection. Specifically, we first construct a semantic graph that well captures the relations among entity tokens and sentences. Then, we incorporate the relations between two entities for uncertainty propagation to enhance sentence-level hallucination detection. Given that hallucination occurs due to the conflict between sentences, we further present a graph-based uncertainty calibration method that integrates the contradiction probability of the sentence with its neighbors in the semantic graph for uncertainty calculation. Extensive experiments on two datasets show the great advantages of our proposed approach. In particular, we obtain substantial improvements with 19.78% in passage-level hallucination detection.

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UAI Conference 2023 Conference Paper

A constrained Bayesian approach to out-of-distribution prediction

Ziyu Wang 0006
Binjie Yuan
Jiaxun Lu
Bowen Ding
Yunfeng Shao 0001
Qibin Wu
Jun Zhu 0001

Consider the problem of out-of-distribution prediction given data from multiple environments. While a sufficiently diverse collection of training environments will facilitate the identification of an invariant predictor, with an optimal generalization performance, many applications only provide us with a limited number of environments. It is thus necessary to consider adapting to distribution shift using a handful of labeled test samples. We propose a constrained Bayesian approach for this task, which restricts to models with a worst-group training loss above a prespecified threshold. Our method avoids a pathology of the standard Bayesian posterior, which occurs when spurious correlations improve in-distribution prediction. We also show that on certain high-dimensional linear problems, constrained modeling improves the sample efficiency of adaptation. Synthetic and real-world experiments demonstrate the robust performance of our approach.

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NeurIPS Conference 2023 Conference Paper

Evaluating Open-QA Evaluation

Cunxiang Wang
Sirui Cheng
Qipeng Guo
Yuanhao Yue
Bowen Ding
Zhikun Xu
Yidong Wang
Xiangkun Hu

This study focuses on the evaluation of the Open Question Answering (Open-QA) task, which can directly estimate the factuality of large language models (LLMs). Current automatic evaluation methods have shown limitations, indicating that human evaluation still remains the most reliable approach. We introduce a new task, QA Evaluation (QA-Eval) and the corresponding dataset EVOUNA, designed to assess the accuracy of AI-generated answers in relation to standard answers within Open-QA. Our evaluation of these methods utilizes human-annotated results to measure their performance. Specifically, the work investigates methods that show high correlation with human evaluations, deeming them more reliable. We also discuss the pitfalls of current methods and methods to improve LLM-based evaluators. We believe this new QA-Eval task and corresponding dataset EVOUNA will facilitate the development of more effective automatic evaluation tools and prove valuable for future research in this area. All resources are available at https: //github. com/wangcunxiang/QA-Eval and it is under the Apache-2. 0 License.

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