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Bing He

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6 papers

2 author rows

NeurIPS Conference 2025 Conference Paper

H3D-DGS: Exploring Heterogeneous 3D Motion Representation for Deformable 3D Gaussian Splatting

Bing He
Yunuo Chen
Guo Lu
Qi Wang
Qunshan Gu
Rong Xie
Li Song
Wenjun Zhang

Dynamic scene reconstruction poses a persistent challenge in 3D vision. Deformable 3D Gaussian Splatting has emerged as an effective method for this task, offering real-time rendering and high visual fidelity. This approach decomposes a dynamic scene into a static representation in a canonical space and time-varying scene motion. Scene motion is defined as the collective movement of all Gaussian points, and for compactness, existing approaches commonly adopt implicit neural fields or sparse control points. However, these methods predominantly rely on gradient-based optimization for all motion information. Due to the high degree of freedom, they struggle to converge on real-world datasets exhibiting complex motion. To preserve the compactness of motion representation and address convergence challenges, this paper proposes heterogeneous 3D control points, termed \textbf{H3D control points}, whose attributes are obtained using a hybrid strategy combining optical flow back-projection and gradient-based methods. This design decouples directly observable motion components from those that are geometrically occluded. Specifically, components of 3D motion that project onto the image plane are directly acquired via optical flow back projection, while unobservable portions are refined through gradient-based optimization. Experiments on the Neu3DV and CMU-Panoptic datasets demonstrate that our method achieves superior performance over state-of-the-art deformable 3D Gaussian splatting techniques. Remarkably, our method converges within just 100 iterations and achieves a per-frame processing speed of 2 seconds on a single NVIDIA RTX 4070 GPU.

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ICML Conference 2025 Conference Paper

Steering Protein Language Models

Long-Kai Huang
Rongyi Zhu
Bing He
Jianhua Yao 0001

Protein Language Models (PLMs), pre-trained on extensive evolutionary data from natural proteins, have emerged as indispensable tools for protein design. While powerful, PLMs often struggle to produce proteins with precisely specified functionalities or properties due to inherent challenges in controlling their outputs. In this work, we investigate the potential of Activation Steering, a technique originally developed for controlling text generation in Large Language Models (LLMs), to direct PLMs toward generating protein sequences with targeted properties. We propose a simple yet effective method that employs activation editing to steer PLM outputs, and extend this approach to protein optimization through a novel editing site identification module. Through comprehensive experiments on lysozyme-like sequence generation and optimization, we demonstrate that our methods can be seamlessly integrated into both auto-encoding and autoregressive PLMs without requiring additional training. These results highlight a promising direction for precise protein engineering using foundation models. Code is available at https: //github. com/Long-Kai/Steering-PLMs.

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AAAI Conference 2024 Conference Paper

A Label Disambiguation-Based Multimodal Massive Multiple Instance Learning Approach for Immune Repertoire Classification

Fan Xu
Yu Zhao
Bingzhe Wu
Yueshan Huang
Qin Ren
Yang Xiao
Bing He
Jie Zheng

One individual human’s immune repertoire consists of a huge set of adaptive immune receptors at a certain time point, representing the individual's adaptive immune state. Immune repertoire classification and associated receptor identification have the potential to make a transformative contribution to the development of novel vaccines and therapies. The vast number of instances and exceedingly low witness rate pose a great challenge to the immune repertoire classification, which can be formulated as a Massive Multiple Instance Learning (MMIL) problem. Traditional MIL methods, at both bag-level and instance-level, confront the issues of substantial computational burden or supervision ambiguity when handling massive instances. To address these issues, we propose a novel label disambiguation-based multimodal massive multiple instance learning approach (LaDM³IL) for immune repertoire classification. LaDM³IL adapts the instance-level MIL paradigm to deal with the issue of high computational cost and employs a specially-designed label disambiguation module for label correction, mitigating the impact of misleading supervision. To achieve a more comprehensive representation of each receptor, LaDM³IL leverages a multimodal fusion module with gating-based attention and tensor-fusion to integrate the information from gene segments and amino acid (AA) sequences of each immune receptor. Extensive experiments on the Cytomegalovirus (CMV) and Cancer datasets demonstrate the superior performance of the proposed LaDM³IL for both immune repertoire classification and associated receptor identification tasks. The code is publicly available at https://github.com/Josie-xufan/LaDM3IL.

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IJCAI Conference 2023 Conference Paper

A Noisy-Label-Learning Formulation for Immune Repertoire Classification and Disease-Associated Immune Receptor Sequence Identification

MingCai Chen
Yu Zhao
Zhonghuang Wang
Bing He
Jianhua Yao

Immune repertoire classification, a typical multiple instance learning (MIL) problem, is a frontier research topic in computational biology that makes transformative contributions to new vaccines and immune therapies. However, the traditional instance-space MIL, directly assigning bag-level labels to instances, suffers from the massive amount of noisy labels and extremely low witness rate. In this work, we propose a noisy-label-learning formulation to solve the immune repertoire classification task. To remedy the inaccurate supervision of repertoire-level labels for a sequence-level classifier, we design a robust training strategy: The initial labels are smoothed to be asymmetric and are progressively corrected using the model's predictions throughout the training process. Furthermore, two models with the same architecture but different parameter initialization are co-trained simultaneously to remedy the known ``confirmation bias'' problem in the self-training-like schema. As a result, we obtain accurate sequence-level classification and, subsequently, repertoire-level classification. Experiments on the Cytomegalovirus (CMV) and Cancer datasets demonstrate our method's effectiveness and superior performance on sequence-level and repertoire-level tasks. Code available at https: //github. com/TencentAILabHealthcare/NLL-IRC.

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AAAI Conference 2021 Conference Paper

Correlation-Aware Heuristic Search for Intelligent Virtual Machine Provisioning in Cloud Systems

Chuan Luo
Bo Qiao
Wenqian Xing
Xin Chen
Pu Zhao
Chao Du
Randolph Yao
Hongyu Zhang

The optimization of resource is crucial for the operation of public cloud systems such as Microsoft Azure, as well as servers dedicated to the workloads of large customers such as Microsoft 365. Those optimization tasks often need to take unknown parameters into consideration and can be formulated as Prediction+Optimization problems. This paper proposes a new Prediction+Optimization method named Correlation-Aware Heuristic Search (CAHS) that is capable of accounting for the uncertainty in unknown parameters and delivering effective solutions to difficult optimization problems. We apply this method to solving the predictive virtual machine (VM) provisioning (PreVMP) problem, where the VM provisioning plans are optimized based on the predicted demands of different VM types, to ensure rapid provisions upon customers’ requests and to pursue high resource utilization. Unlike the current state-of-the-art PreVMP approaches that assume independence among the demands for different VM types, CAHS incorporates demand correlation when conducting prediction and optimization in a novel and effective way. Our experiments on two public benchmarks and one industrial benchmark demonstrate that CAHS can achieve better performance than its nine state-of-the-art competitors. CAHS has been successfully deployed in Microsoft Azure and significantly improved its performance. The main ideas of CAHS have also been leveraged to improve the efficiency and the reliability of the cloud services provided by Microsoft 365.

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AAAI Conference 2021 Conference Paper

PULNS: Positive-Unlabeled Learning with Effective Negative Sample Selector

Chuan Luo
Pu Zhao
Chen Chen
Bo Qiao
Chao Du
Hongyu Zhang
Wei Wu
Shaowei Cai

Positive-unlabeled learning (PU learning) is an important case of binary classification where the training data only contains positive and unlabeled samples. The current stateof-the-art approach for PU learning is the cost-sensitive approach, which casts PU learning as a cost-sensitive classification problem and relies on unbiased risk estimator for correcting the bias introduced by the unlabeled samples. However, this approach requires the knowledge of class prior and is subject to the potential label noise. In this paper, we propose a novel PU learning approach dubbed PULNS, equipped with an effective negative sample selector, which is optimized by reinforcement learning. Our PULNS approach employs an effective negative sample selector as the agent responsible for selecting negative samples from the unlabeled data. While the selected, likely negative samples can be used to improve the classifier, the performance of classifier is also used as the reward to improve the selector through the REINFORCE algorithm. By alternating the updates of the selector and the classifier, the performance of both is improved. Extensive experimental studies on 7 real-world application benchmarks demonstrate that PULNS consistently outperforms the current state-of-the-art methods in PU learning, and our experimental results also confirm the effectiveness of the negative sample selector underlying PULNS.

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