NeurIPS Conference 2025 Conference Paper
Logical Expressiveness of Graph Neural Networks with Hierarchical Node Individualization
- Arie Soeteman
- Balder ten Cate
We propose and study Hierarchical Ego Graph Neural Networks (HE-GNNs), an expressive extension of graph neural networks (GNNs) with hierarchical node individualization, inspired by the Individualization-Refinement paradigm for isomorphism testing. HE-GNNs generalize subgraph-GNNs and form a hierarchy of increasingly expressive models that, in the limit, distinguish graphs up to isomorphism. We show that, over graphs of bounded degree, the separating power of HE-GNN node classifiers equals that of graded hybrid logic. This characterization enables us to relate the separating power of HE-GNNs to that of higher-order GNNs, GNNs enriched with local homomorphism count features, and color refinement algorithms based on Individualization-Refinement. Our experimental results confirm the practical feasibility of HE-GNNs and show benefits in comparison with traditional GNN architectures, both with and without local homomorphism count features.