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Anna Wang Roe

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7 papers
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7

ICLR Conference 2025 Conference Paper

Emergent Orientation Maps - - Mechanisms, Coding Efficiency and Robustness

  • Haixin Zhong
  • Haoyu Wang
  • Wei P. Dai
  • Yuchao Huang
  • Mingyi Huang
  • Rubin Wang
  • Anna Wang Roe
  • Yuguo Yu

Extensive experimental studies have shown that in lower mammals, neuronal orientation preference in the primary visual cortex is organized in disordered "salt-and-pepper" organizations. In contrast, higher-order mammals display a continuous variation in orientation preference, forming pinwheel-like structures. Despite these observations, the spiking mechanisms underlying the emergence of these distinct topological structures and their functional roles in visual processing remain poorly understood. To address this, we developed a self-evolving spiking neural network model with Hebbian plasticity, trained using physiological parameters characteristic of rodents, cats, and primates, including retinotopy, neuronal morphology, and connectivity patterns. Our results identify critical factors, such as the degree of input visual field overlap, neuronal connection range, and the balance between localized connectivity and long-range competition, that determine the emergence of either salt-and-pepper or pinwheel-like topologies. Furthermore, we demonstrate that pinwheel structures exhibit lower wiring costs and enhanced sparse coding capabilities compared to salt-and-pepper organizations. They also maintain greater coding robustness against noise in naturalistic visual stimuli. These findings suggest that such topological structures confer significant computational advantages in visual processing and highlight their potential application in the design of brain-inspired deep learning networks and algorithms.

YNIMG Journal 2025 Journal Article

Mesoscale functional connectivity of amygdala to the auditory and prefrontal cortex of macaque monkeys revealed by INS-fMRI

  • Qianbing Li
  • An Ping
  • Yuqi Feng
  • Bin Xu
  • Baorong Zhang
  • Anna Wang Roe
  • Lixia Gao
  • Xinjian Li

Mammals rely heavily on their auditory system to perceive environmental threats, socially communicate, and care for the young. As an extension of the multiple sensory system including the auditory system, the amygdala evaluates the emotional salience of acoustic stimuli, and mediates its impact on sensory, cognitive, and physiological aspects of emotional processing via the lateral amygdala (LA), basal amygdala (BA), and central amygdala (CeA) nuclei of the amygdala in acoustic domain. However, the functional connections of LA, BA, and CeA with the auditory cortex (AC) and the prefrontal cortex (PFC) remain unclear, particularly at the mesoscale level. Here we employed a novel method called INS-fMRI (Infrared Neural Stimulation combined with high-resolution functional magnetic resonance imaging) in Macaque monkeys, this method permits stimulation of multiple sites within single animals in vivo, so that the relative organization of auditory networks can be studied. We found that: (1) Focal INS stimulation of the amygdala elicited robust and reliable responses in both the AC and the PFC; (2) Amygdala stimulation mainly activated ipsilateral AC and PFC; (3) The stimulation of the amygdala mainly activated the secondary AC, and the dorsolateral PFC; (4) The connection between the amygdala and the cortex is mainly mediated by neurons in LA and BA connection area. Our study further revealed the functional connectivity among the amygdala subnucleus, the auditory cortex and the prefrontal cortex, and will shed light on the research for processing biologically meaningful complex sounds.

YNIMG Journal 2023 Journal Article

Design and application of a multimodality-compatible 1Tx/6Rx RF coil for monkey brain MRI at 7T

  • Shuxian Qu
  • Sunhang Shi
  • Zhiyan Quan
  • Yang Gao
  • Minmin Wang
  • Yueming Wang
  • Gang Pan
  • Hsin-Yi Lai

OBJECTIVE: Blood-oxygen-level-dependent functional MRI allows to investigte neural activities and connectivity. While the non-human primate plays an essential role in neuroscience research, multimodal methods combining functional MRI with other neuroimaging and neuromodulation enable us to understand the brain network at multiple scales. APPROACH: In this study, a tight-fitting helmet-shape receive array with a single transmit loop for anesthetized macaque brain MRI at 7T was fabricated with four openings constructed in the coil housing to accommodate multimodal devices, and the coil performance was quantitatively evaluated and compared to a commercial knee coil. In addition, experiments over three macaques with infrared neural stimulation (INS), focused ultrasound stimulation (FUS), and transcranial direct current stimulation (tDCS) were conducted. MAIN RESULTS: The RF coil showed higher transmit efficiency, comparable homogeneity, improved SNR and enlarged signal coverage over the macaque brain. Infrared neural stimulation was applied to the amygdala in deep brain region, and activations in stimulation sites and connected sites were detected, with the connectivity consistent with anatomical information. Focused ultrasound stimulation was applied to the left visual cortex, and activations were acquired along the ultrasound traveling path, with all time course curves consistent with pre-designed paradigms. The existence of transcranial direct current stimulation electrodes brought no interference to the RF system, as evidenced through high-resolution MPRAGE structure images. SIGNIFICANCE: This pilot study reveals the feasibility for brain investigation at multiple spatiotemporal scales, which may advance our understanding in dynamic brain networks.

YNIMG Journal 2021 Journal Article

Combining brain perturbation and neuroimaging in non-human primates

  • P. Christiaan Klink
  • Jean-François Aubry
  • Vincent P. Ferrera
  • Andrew S. Fox
  • Sean Froudist-Walsh
  • Béchir Jarraya
  • Elisa E. Konofagou
  • Richard J. Krauzlis

Brain perturbation studies allow detailed causal inferences of behavioral and neural processes. Because the combination of brain perturbation methods and neural measurement techniques is inherently challenging, research in humans has predominantly focused on non-invasive, indirect brain perturbations, or neurological lesion studies. Non-human primates have been indispensable as a neurobiological system that is highly similar to humans while simultaneously being more experimentally tractable, allowing visualization of the functional and structural impact of systematic brain perturbation. This review considers the state of the art in non-human primate brain perturbation with a focus on approaches that can be combined with neuroimaging. We consider both non-reversible (lesions) and reversible or temporary perturbations such as electrical, pharmacological, optical, optogenetic, chemogenetic, pathway-selective, and ultrasound based interference methods. Method-specific considerations from the research and development community are offered to facilitate research in this field and support further innovations. We conclude by identifying novel avenues for further research and innovation and by highlighting the clinical translational potential of the methods.

YNIMG Journal 2021 Journal Article

Infrared neural stimulation with 7T fMRI: A rapid in vivo method for mapping cortical connections of primate amygdala

  • Sunhang Shi
  • Augix Guohua Xu
  • Yun-Yun Rui
  • Xiaotong Zhang
  • Lizabeth M. Romanski
  • Katalin M. Gothard
  • Anna Wang Roe

We have previously shown that INS-fMRI is a rapid method for mapping mesoscale brain networks in the macaque monkey brain. Focal stimulation of single cortical sites led to the activation of connected cortical locations, resulting in a global connectivity map. Here, we have extended this method for mapping brainwide networks following stimulation of single subcortical sites. As a testbed, we focused on the basal nucleus of the amygdala in the macaque monkey. We describe methods to target basal nucleus locations with submillimeter precision, pulse train stimulation methods, and statistical tests for assessing non-random nature of activations. Using these methods, we report that stimulation of precisely targeted loci in the basal nucleus produced sparse and specific activations in the brain. Activations were observed in the insular and sensory association cortices as well as activations in the cingulate cortex, consistent with known anatomical connections. What is new here is that the activations were focal and, in some cases, exhibited shifting topography with millimeter shifts in stimulation site. The precision of the method enables networks mapped from different nearby sites in the basal nucleus to be distinguished. While further investigation is needed to improve the sensitivity of this method, our analyses do support the reproducibility and non-random nature of some of the activations. We suggest that INS-fMRI is a promising method for mapping large-scale cortical and subcortical networks at high spatial resolution.

YNIMG Journal 2020 Journal Article

A 16-channel AC/DC array coil for anesthetized monkey whole-brain imaging at 7T

  • Yang Gao
  • Azma Mareyam
  • Yi Sun
  • Thomas Witzel
  • Nicolas Arango
  • Irene Kuang
  • Jacob White
  • Anna Wang Roe

Functional magnetic resonance imaging (fMRI) in monkeys is important for bridging the gap between invasive animal brain studies and non-invasive human brain studies. To resolve the finer functional structure of the monkey brain, ultra-high-field (UHF) MR is essential, and high-performance, close-fitting RF receive coils are typically desired to fully leverage the intrinsic gains provided by UHF MRI. Moreover, static field (B0) inhomogeneity arising from the tissue susceptibility interface is more severe at UHF, presenting an obstacle to achieving high-resolution fMRI. B0 shim of the monkey head is challenging due to its smaller size and more complex sources of B0 offsets in multi-modal imaging tasks. In the present work, we have customized an array coil for lightly-anesthetized monkey fMRI in the 7T human scanner that combines RF and multi-coil (MC) B0 shim functionality (also referred to as AC/DC coils) to provide high imaging SNR and high-spatial-order, rapidly switchable B0-shim capability. Additional space was retained on the coil to render it compatible with monkey multi-modal imaging studies. Both MC global (whole-volume) and dynamic (slice-optimized) shim methods were tested and evaluated, and the benefits of MC shim for fMRI experiments was also studied. A minor reduction in RF coil performance was found after introducing additional B0 shim circuitry. However, the proposed RF coil provided higher image SNR and more uniform contrast compared to a commercially available coil for human knee imaging. Compared with static 2nd-order shim, the B0 inhomogeneity was reduced by 56.8%, and 95-percentile B0 offset was reduced to within 28.2 Hz through MC shim, versus 68.7 Hz with 2nd-order static shim. As a result, functional image quality could be improved, and brain activation can be better detected using the proposed AC/DC monkey coil.

YNIMG Journal 2020 Journal Article

Optical imaging reveals functional domains in primate sensorimotor cortex

  • Robert M. Friedman
  • Nicholas G. Chehade
  • Anna Wang Roe
  • Omar A. Gharbawie

Motor cortex (M1) and somatosensory cortex (S1) are central to arm and hand control. Efforts to understand encoding in M1 and S1 have focused on temporal relationships between neural activity and movement features. However, it remains unclear how the neural activity is spatially organized within M1 and S1. Optical imaging methods are well-suited for revealing the spatio-temporal organization of cortical activity, but their application is sparse in monkey sensorimotor cortex. Here, we investigate the effectiveness of intrinsic signal optical imaging (ISOI) for measuring cortical activity that supports arm and hand control in a macaque monkey. ISOI revealed spatial domains that were active in M1 and S1 in response to instructed reaching and grasping. The lateral M1 domains overlapped the hand representation and contained a population of neurons with peak firing during grasping. In contrast, the medial M1 domain overlapped the arm representation and a population of neurons with peak firing during reaching. The S1 domain overlapped the hand representations of areas 1 and 2 and a population of neurons with peak firing upon hand contact with the target. Our single unit recordings indicate that ISOI domains report the locations of spatial clusters of functionally related neurons. ISOI is therefore an effective tool for surveilling the neocortex for “hot zones” of activity that supports movement. Combining the strengths of ISOI with other imaging modalities (e. g. , fMRI, 2-photon) and with electrophysiological methods can open new frontiers in understanding the spatio-temporal organization of cortical signals involved in movement control.