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Alexander Immer

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17 papers

2 author rows

ICLR Conference 2025 Conference Paper

Influence Functions for Scalable Data Attribution in Diffusion Models

Bruno Kacper Mlodozeniec
Runa Eschenhagen
Juhan Bae
Alexander Immer
David Krueger 0001
Richard E. Turner

Diffusion models have led to significant advancements in generative modelling. Yet their widespread adoption poses challenges regarding data attribution and interpretability. In this paper, we aim to help address such challenges in diffusion models by extending influence functions. Influence function-based data attribution methods approximate how a model's output would have changed if some training data were removed. In supervised learning, this is usually used for predicting how the loss on a particular example would change. For diffusion models, we focus on predicting the change in the probability of generating a particular example via several proxy measurements. We show how to formulate influence functions for such quantities and how previously proposed methods can be interpreted as particular design choices in our framework. To ensure scalability of the Hessian computations in influence functions, we use a K-FAC approximation based on generalised Gauss-Newton matrices specifically tailored to diffusion models. We show that our recommended method outperforms previously proposed data attribution methods on common data attribution evaluations, such as the Linear Data-modelling Score (LDS) or retraining without top influences, without the need for method-specific hyperparameter tuning.

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ICLR Conference 2025 Conference Paper

ZAPBench: A Benchmark for Whole-Brain Activity Prediction in Zebrafish

Jan-Matthis Lueckmann
Alexander Immer
Alex Bo-Yuan Chen
Peter H. Li
Mariela D. Petkova
Nirmala A. Iyer
Luuk Willem Hesselink
Aparna Dev

Data-driven benchmarks have led to significant progress in key scientific modeling domains including weather and structural biology. Here, we introduce the Zebrafish Activity Prediction Benchmark (ZAPBench) to measure progress on the problem of predicting cellular-resolution neural activity throughout an entire vertebrate brain. The benchmark is based on a novel dataset containing 4d light-sheet microscopy recordings of over 70,000 neurons in a larval zebrafish brain, along with motion stabilized and voxel-level cell segmentations of these data that facilitate development of a variety of forecasting methods. Initial results from a selection of time series and volumetric video modeling approaches achieve better performance than naive baseline methods, but also show room for further improvement. The specific brain used in the activity recording is also undergoing synaptic-level anatomical mapping, which will enable future integration of detailed structural information into forecasting methods.

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ICML Conference 2024 Conference Paper

Improving Neural Additive Models with Bayesian Principles

Kouroche Bouchiat
Alexander Immer
Hugo Yèche
Gunnar Rätsch
Vincent Fortuin

Neural additive models (NAMs) enhance the transparency of deep neural networks by handling input features in separate additive sub-networks. However, they lack inherent mechanisms that provide calibrated uncertainties and enable selection of relevant features and interactions. Approaching NAMs from a Bayesian perspective, we augment them in three primary ways, namely by a) providing credible intervals for the individual additive sub-networks; b) estimating the marginal likelihood to perform an implicit selection of features via an empirical Bayes procedure; and c) facilitating the ranking of feature pairs as candidates for second-order interaction in fine-tuned models. In particular, we develop Laplace-approximated NAMs (LA-NAMs), which show improved empirical performance on tabular datasets and challenging real-world medical tasks.

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ICML Conference 2024 Conference Paper

Position: Bayesian Deep Learning is Needed in the Age of Large-Scale AI

Theodore Papamarkou
Maria Skoularidou
Konstantina Palla
Laurence Aitchison
Julyan Arbel
David B. Dunson
Maurizio Filippone
Vincent Fortuin

In the current landscape of deep learning research, there is a predominant emphasis on achieving high predictive accuracy in supervised tasks involving large image and language datasets. However, a broader perspective reveals a multitude of overlooked metrics, tasks, and data types, such as uncertainty, active and continual learning, and scientific data, that demand attention. Bayesian deep learning (BDL) constitutes a promising avenue, offering advantages across these diverse settings. This paper posits that BDL can elevate the capabilities of deep learning. It revisits the strengths of BDL, acknowledges existing challenges, and highlights some exciting research avenues aimed at addressing these obstacles. Looking ahead, the discussion focuses on possible ways to combine large-scale foundation models with BDL to unlock their full potential.

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NeurIPS Conference 2024 Conference Paper

Shaving Weights with Occam's Razor: Bayesian Sparsification for Neural Networks using the Marginal Likelihood

Rayen Dhahri
Alexander Immer
Betrand Charpentier
Stephan Günnemann
Vincent Fortuin

Neural network sparsification is a promising avenue to save computational time and memory costs, especially in an age where many successful AI models are becoming too large to naively deploy on consumer hardware. While much work has focused on different weight pruning criteria, the overall sparsifiability of the network, i. e. , its capacity to be pruned without quality loss, has often been overlooked. We present Sparsifiability via the Marginal likelihood (SpaM), a sparsification framework that highlights the effectiveness of using the Bayesian marginal likelihood in conjunction with sparsity-inducing priors for making neural networks more sparsifiable. Our approach implements an automatic Occam's razor that selects the most sparsifiable model that still explains the data well, both for structured and unstructured sparsification. In addition, we demonstrate that the pre-computed posterior precision from the Laplace approximation can be re-used to define a cheap pruning criterion, which outperforms many existing (more expensive) approaches. We demonstrate the effectiveness of our framework, especially at high sparsity levels, across a range of different neural network architectures and datasets.

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ICLR Conference 2024 Conference Paper

Towards Training Without Depth Limits: Batch Normalization Without Gradient Explosion

Alexandru Meterez
Amir Joudaki
Francesco Orabona
Alexander Immer
Gunnar Rätsch
Hadi Daneshmand

Normalization layers are one of the key building blocks for deep neural networks. Several theoretical studies have shown that batch normalization improves the signal propagation, by avoiding the representations from becoming collinear across the layers. However, results on mean-field theory of batch normalization also conclude that this benefit comes at the expense of exploding gradients in depth. Motivated by these two aspects of batch normalization, in this study we pose the following question: *Can a batch-normalized network keep the optimal signal propagation properties, but avoid exploding gradients?* We answer this question in the affirmative by giving a particular construction of an *MLP with linear activations* and batch-normalization that provably has *bounded gradients* at any depth. Based on Weingarten calculus, we develop a rigorous and non-asymptotic theory for this constructed MLP that gives a precise characterization of forward signal propagation, while proving that gradients remain bounded for linearly independent input samples, which holds in most practical settings. Inspired by our theory, we also design an activation shaping scheme that empirically achieves the same properties for non-linear activations.

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NeurIPS Conference 2023 Conference Paper

Effective Bayesian Heteroscedastic Regression with Deep Neural Networks

Alexander Immer
Emanuele Palumbo
Alexander Marx
Julia Vogt

Flexibly quantifying both irreducible aleatoric and model-dependent epistemic uncertainties plays an important role for complex regression problems. While deep neural networks in principle can provide this flexibility and learn heteroscedastic aleatoric uncertainties through non-linear functions, recent works highlight that maximizing the log likelihood objective parameterized by mean and variance can lead to compromised mean fits since the gradient are scaled by the predictive variance, and propose adjustments in line with this premise. We instead propose to use the natural parametrization of the Gaussian, which has been shown to be more stable for heteroscedastic regression based on non-linear feature maps and Gaussian processes. Further, we emphasize the significance of principled regularization of the network parameters and prediction. We therefore propose an efficient Laplace approximation for heteroscedastic neural networks that allows automatic regularization through empirical Bayes and provides epistemic uncertainties, both of which improve generalization. We showcase on a range of regression problems—including a new heteroscedastic image regression benchmark—that our methods are scalable, improve over previous approaches for heteroscedastic regression, and provide epistemic uncertainty without requiring hyperparameter tuning.

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NeurIPS Conference 2023 Conference Paper

Kronecker-Factored Approximate Curvature for Modern Neural Network Architectures

Runa Eschenhagen
Alexander Immer
Richard Turner
Frank Schneider
Philipp Hennig

The core components of many modern neural network architectures, such as transformers, convolutional, or graph neural networks, can be expressed as linear layers with *weight-sharing*. Kronecker-Factored Approximate Curvature (K-FAC), a second-order optimisation method, has shown promise to speed up neural network training and thereby reduce computational costs. However, there is currently no framework to apply it to generic architectures, specifically ones with linear weight-sharing layers. In this work, we identify two different settings of linear weight-sharing layers which motivate two flavours of K-FAC -- *expand* and *reduce*. We show that they are exact for deep linear networks with weight-sharing in their respective setting. Notably, K-FAC-reduce is generally faster than K-FAC-expand, which we leverage to speed up automatic hyperparameter selection via optimising the marginal likelihood for a Wide ResNet. Finally, we observe little difference between these two K-FAC variations when using them to train both a graph neural network and a vision transformer. However, both variations are able to reach a fixed validation metric target in $50$-$75$\% of the number of steps of a first-order reference run, which translates into a comparable improvement in wall-clock time. This highlights the potential of applying K-FAC to modern neural network architectures.

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NeurIPS Conference 2023 Conference Paper

Learning Layer-wise Equivariances Automatically using Gradients

Tycho van der Ouderaa
Alexander Immer
Mark van der Wilk

Convolutions encode equivariance symmetries into neural networks leading to better generalisation performance. However, symmetries provide fixed hard constraints on the functions a network can represent, need to be specified in advance, and can not be adapted. Our goal is to allow flexible symmetry constraints that can automatically be learned from data using gradients. Learning symmetry and associated weight connectivity structures from scratch is difficult for two reasons. First, it requires efficient and flexible parameterisations of layer-wise equivariances. Secondly, symmetries act as constraints and are therefore not encouraged by training losses measuring data fit. To overcome these challenges, we improve parameterisations of soft equivariance and learn the amount of equivariance in layers by optimising the marginal likelihood, estimated using differentiable Laplace approximations. The objective balances data fit and model complexity enabling layer-wise symmetry discovery in deep networks. We demonstrate the ability to automatically learn layer-wise equivariances on image classification tasks, achieving equivalent or improved performance over baselines with hard-coded symmetry.

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ICML Conference 2023 Conference Paper

On the Identifiability and Estimation of Causal Location-Scale Noise Models

Alexander Immer
Christoph Schultheiss
Julia E. Vogt
Bernhard Schölkopf
Peter Bühlmann
Alexander Marx 0001

We study the class of location-scale or heteroscedastic noise models (LSNMs), in which the effect $Y$ can be written as a function of the cause $X$ and a noise source $N$ independent of $X$, which may be scaled by a positive function $g$ over the cause, i. e. , $Y = f(X) + g(X)N$. Despite the generality of the model class, we show the causal direction is identifiable up to some pathological cases. To empirically validate these theoretical findings, we propose two estimators for LSNMs: an estimator based on (non-linear) feature maps, and one based on neural networks. Both model the conditional distribution of $Y$ given $X$ as a Gaussian parameterized by its natural parameters. When the feature maps are correctly specified, we prove that our estimator is jointly concave, and a consistent estimator for the cause-effect identification task. Although the the neural network does not inherit those guarantees, it can fit functions of arbitrary complexity, and reaches state-of-the-art performance across benchmarks.

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ICML Conference 2023 Conference Paper

Stochastic Marginal Likelihood Gradients using Neural Tangent Kernels

Alexander Immer
Tycho F. A. van der Ouderaa
Mark van der Wilk
Gunnar Rätsch
Bernhard Schölkopf

Selecting hyperparameters in deep learning greatly impacts its effectiveness but requires manual effort and expertise. Recent works show that Bayesian model selection with Laplace approximations can allow to optimize such hyperparameters just like standard neural network parameters using gradients and on the training data. However, estimating a single hyperparameter gradient requires a pass through the entire dataset, limiting the scalability of such algorithms. In this work, we overcome this issue by introducing lower bounds to the linearized Laplace approximation of the marginal likelihood. In contrast to previous estimators, these bounds are amenable to stochastic-gradient-based optimization and allow to trade off estimation accuracy against computational complexity. We derive them using the function-space form of the linearized Laplace, which can be estimated using the neural tangent kernel. Experimentally, we show that the estimators can significantly accelerate gradient-based hyperparameter optimization.

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NeurIPS Conference 2022 Conference Paper

Invariance Learning in Deep Neural Networks with Differentiable Laplace Approximations

Alexander Immer
Tycho van der Ouderaa
Gunnar Rätsch
Vincent Fortuin
Mark van der Wilk

Data augmentation is commonly applied to improve performance of deep learning by enforcing the knowledge that certain transformations on the input preserve the output. Currently, the data augmentation parameters are chosen by human effort and costly cross-validation, which makes it cumbersome to apply to new datasets. We develop a convenient gradient-based method for selecting the data augmentation without validation data during training of a deep neural network. Our approach relies on phrasing data augmentation as an invariance in the prior distribution on the functions of a neural network, which allows us to learn it using Bayesian model selection. This has been shown to work in Gaussian processes, but not yet for deep neural networks. We propose a differentiable Kronecker-factored Laplace approximation to the marginal likelihood as our objective, which can be optimised without human supervision or validation data. We show that our method can successfully recover invariances present in the data, and that this improves generalisation and data efficiency on image datasets.

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NeurIPS Conference 2021 Conference Paper

Laplace Redux - Effortless Bayesian Deep Learning

Erik Daxberger
Agustinus Kristiadi
Alexander Immer
Runa Eschenhagen
Matthias Bauer
Philipp Hennig

Bayesian formulations of deep learning have been shown to have compelling theoretical properties and offer practical functional benefits, such as improved predictive uncertainty quantification and model selection. The Laplace approximation (LA) is a classic, and arguably the simplest family of approximations for the intractable posteriors of deep neural networks. Yet, despite its simplicity, the LA is not as popular as alternatives like variational Bayes or deep ensembles. This may be due to assumptions that the LA is expensive due to the involved Hessian computation, that it is difficult to implement, or that it yields inferior results. In this work we show that these are misconceptions: we (i) review the range of variants of the LA including versions with minimal cost overhead; (ii) introduce "laplace", an easy-to-use software library for PyTorch offering user-friendly access to all major flavors of the LA; and (iii) demonstrate through extensive experiments that the LA is competitive with more popular alternatives in terms of performance, while excelling in terms of computational cost. We hope that this work will serve as a catalyst to a wider adoption of the LA in practical deep learning, including in domains where Bayesian approaches are not typically considered at the moment.

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ICML Conference 2021 Conference Paper

Scalable Marginal Likelihood Estimation for Model Selection in Deep Learning

Alexander Immer
Matthias Bauer 0001
Vincent Fortuin
Gunnar Rätsch
Mohammad Emtiyaz Khan

Marginal-likelihood based model-selection, even though promising, is rarely used in deep learning due to estimation difficulties. Instead, most approaches rely on validation data, which may not be readily available. In this work, we present a scalable marginal-likelihood estimation method to select both hyperparameters and network architectures, based on the training data alone. Some hyperparameters can be estimated online during training, simplifying the procedure. Our marginal-likelihood estimate is based on Laplace’s method and Gauss-Newton approximations to the Hessian, and it outperforms cross-validation and manual tuning on standard regression and image classification datasets, especially in terms of calibration and out-of-distribution detection. Our work shows that marginal likelihoods can improve generalization and be useful when validation data is unavailable (e. g. , in nonstationary settings).

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NeurIPS Conference 2020 Conference Paper

Continual Deep Learning by Functional Regularisation of Memorable Past

Pingbo Pan
Siddharth Swaroop
Alexander Immer
Runa Eschenhagen
Richard Turner
Mohammad Emtiyaz Khan

Continually learning new skills is important for intelligent systems, yet standard deep learning methods suffer from catastrophic forgetting of the past. Recent works address this with weight regularisation. Functional regularisation, although computationally expensive, is expected to perform better, but rarely does so in practice. In this paper, we fix this issue by using a new functional-regularisation approach that utilises a few memorable past examples crucial to avoid forgetting. By using a Gaussian Process formulation of deep networks, our approach enables training in weight-space while identifying both the memorable past and a functional prior. Our method achieves state-of-the-art performance on standard benchmarks and opens a new direction for life-long learning where regularisation and memory-based methods are naturally combined.

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NeurIPS Conference 2019 Conference Paper

Approximate Inference Turns Deep Networks into Gaussian Processes

Mohammad Emtiyaz Khan
Alexander Immer
Ehsan Abedi
Maciej Korzepa

Deep neural networks (DNN) and Gaussian processes (GP) are two powerful models with several theoretical connections relating them, but the relationship between their training methods is not well understood. In this paper, we show that certain Gaussian posterior approximations for Bayesian DNNs are equivalent to GP posteriors. This enables us to relate solutions and iterations of a deep-learning algorithm to GP inference. As a result, we can obtain a GP kernel and a nonlinear feature map while training a DNN. Surprisingly, the resulting kernel is the neural tangent kernel. We show kernels obtained on real datasets and demonstrate the use of the GP marginal likelihood to tune hyperparameters of DNNs. Our work aims to facilitate further research on combining DNNs and GPs in practical settings.

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ICML Conference 2019 Conference Paper

Efficient learning of smooth probability functions from Bernoulli tests with guarantees

Paul Rolland
Ali Kavis
Alexander Immer
Adish Singla
Volkan Cevher

We study the fundamental problem of learning an unknown, smooth probability function via point-wise Bernoulli tests. We provide a scalable algorithm for efficiently solving this problem with rigorous guarantees. In particular, we prove the convergence rate of our posterior update rule to the true probability function in L2-norm. Moreover, we allow the Bernoulli tests to depend on contextual features, and provide a modified inference engine with provable guarantees for this novel setting. Numerical results show that the empirical convergence rates match the theory, and illustrate the superiority of our approach in handling contextual features over the state-of-the-art.

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