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Alain Trouvé

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4 papers

1 author row

YNIMG Journal 2014 Journal Article

Morphometry of anatomical shape complexes with dense deformations and sparse parameters

Stanley Durrleman
Marcel Prastawa
Nicolas Charon
Julie R. Korenberg
Sarang Joshi
Guido Gerig
Alain Trouvé

We propose a generic method for the statistical analysis of collections of anatomical shape complexes, namely sets of surfaces that were previously segmented and labeled in a group of subjects. The method estimates an anatomical model, the template complex, that is representative of the population under study. Its shape reflects anatomical invariants within the dataset. In addition, the method automatically places control points near the most variable parts of the template complex. Vectors attached to these points are parameters of deformations of the ambient 3D space. These deformations warp the template to each subject's complex in a way that preserves the organization of the anatomical structures. Multivariate statistical analysis is applied to these deformation parameters to test for group differences. Results of the statistical analysis are then expressed in terms of deformation patterns of the template complex, and can be visualized and interpreted. The user needs only to specify the topology of the template complex and the number of control points. The method then automatically estimates the shape of the template complex, the optimal position of control points and deformation parameters. The proposed approach is completely generic with respect to any type of application and well adapted to efficient use in clinical studies, in that it does not require point correspondence across surfaces and is robust to mesh imperfections such as holes, spikes, inconsistent orientation or irregular meshing. The approach is illustrated with a neuroimaging study of Down syndrome (DS). The results demonstrate that the complex of deep brain structures shows a statistically significant shape difference between control and DS subjects. The deformation-based modelingis able to classify subjects with very high specificity and sensitivity, thus showing important generalization capability even given a low sample size. We show that the results remain significant even if the number of control points, and hence the dimension of variables in the statistical model, are drastically reduced. The analysis may even suggest that parsimonious models have an increased statistical performance. The method has been implemented in the software Deformetrica, which is publicly available at www. deformetrica. org.

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YNIMG Journal 2011 Journal Article

Registration, atlas estimation and variability analysis of white matter fiber bundles modeled as currents

Stanley Durrleman
Pierre Fillard
Xavier Pennec
Alain Trouvé
Nicholas Ayache

This paper proposes a generic framework for the registration, the template estimation and the variability analysis of white matter fiber bundles extracted from diffusion images. This framework is based on the metric on currents for the comparison of fiber bundles. This metric measures anatomical differences between fiber bundles, seen as global homologous structures across subjects. It avoids the need to establish correspondences between points or between individual fibers of different bundles. It can measure differences both in terms of the geometry of the bundles (like its boundaries) and in terms of the density of fibers within the bundle. It is robust to fiber interruptions and reconnections. In addition, a recently introduced sparse approximation algorithm allows us to give an interpretable representation of the fiber bundles and their variations in the framework of currents. First, we used this metric to drive the registration between two sets of homologous fiber bundles of two different subjects. A dense deformation of the underlying white matter is estimated, which is constrained by the bundles seen as global anatomical landmarks. By contrast, the alignment obtained from image registration is driven only by the local gradient of the image. Second, we propose a generative statistical model for the analysis of a collection of homologous bundles. This model consistently estimates prototype fiber bundles (called template), which capture the anatomical invariants in the population, a set of deformations, which align the geometry of the template to that of each subject and a set of residual perturbations. The statistical analysis of both the deformations and the residuals describe the anatomical variability in terms of geometry (stretching, torque, etc.) and “texture” (fiber density, etc.). Third, this statistical modeling allows us to simulate new synthetic bundles according to the estimated variability. This gives a way to interpret the anatomical features that the model detects consistently across the subjects. This may be used to better understand the bias introduced by the fiber extraction methods and eventually to give anatomical characterization of the normal or pathological variability of fiber bundles.

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YNIMG Journal 2008 Journal Article

Bayesian template estimation in computational anatomy

Jun Ma
Michael I. Miller
Alain Trouvé
Laurent Younes

Templates play a fundamental role in Computational Anatomy. In this paper, we present a Bayesian model for template estimation. It is assumed that observed images I 1, I 2, …, I N are generated by shooting the template J through Gaussian distributed random initial momenta θ 1, θ 2, …, θ N. The template is J modeled as a deformation from a given hypertemplate J 0 with initial momentum μ, which has a Gaussian prior. We apply a mode approximation of the EM (MAEM) procedure, where the conditional expectation is replaced by a Dirac measure at the mode. This leads us to an image matching problem with a Jacobian weight term, and we solve it by deriving the weighted Euler–Lagrange equation. The results of template estimation for hippocampus and cardiac data are presented.

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YNIMG Journal 2004 Journal Article

Soliton dynamics in computational anatomy

Darryl D. Holm
J. Tilak Ratnanather
Alain Trouvé
Laurent Younes

Computational anatomy (CA) has introduced the idea of anatomical structures being transformed by geodesic deformations on groups of diffeomorphisms. Among these geometric structures, landmarks and image outlines in CA are shown to be singular solutions of a partial differential equation that is called the geodesic EPDiff equation. A recently discovered momentum map for singular solutions of EPDiff yields their canonical Hamiltonian formulation, which in turn provides a complete parameterization of the landmarks by their canonical positions and momenta. The momentum map provides an isomorphism between landmarks (and outlines) for images and singular soliton solutions of the EPDiff equation. This isomorphism suggests a new dynamical paradigm for CA, as well as new data representation.

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