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Adam Margolin

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AAAI Conference 2014 Conference Paper

Kernelized Bayesian Transfer Learning

  • Mehmet Gönen
  • Adam Margolin

Transfer learning considers related but distinct tasks defined on heterogenous domains and tries to transfer knowledge between these tasks to improve generalization performance. It is particularly useful when we do not have sufficient amount of labeled training data in some tasks, which may be very costly, laborious, or even infeasible to obtain. Instead, learning the tasks jointly enables us to effectively increase the amount of labeled training data. In this paper, we formulate a kernelized Bayesian transfer learning framework that is a principled combination of kernel-based dimensionality reduction models with task-specific projection matrices to find a shared subspace and a coupled classification model for all of the tasks in this subspace. Our two main contributions are: (i) two novel probabilistic models for binary and multiclass classification, and (ii) very efficient variational approximation procedures for these models. We illustrate the generalization performance of our algorithms on two different applications. In computer vision experiments, our method outperforms the state-of-the-art algorithms on nine out of 12 benchmark supervised domain adaptation experiments defined on two object recognition data sets. In cancer biology experiments, we use our algorithm to predict mutation status of important cancer genes from gene expression profiles using two distinct cancer populations, namely, patient-derived primary tumor data and in-vitro-derived cancer cell line data. We show that we can increase our generalization performance on primary tumors using cell lines as an auxiliary data source.

NeurIPS Conference 2014 Conference Paper

Localized Data Fusion for Kernel k-Means Clustering with Application to Cancer Biology

  • Mehmet Gönen
  • Adam Margolin

In many modern applications from, for example, bioinformatics and computer vision, samples have multiple feature representations coming from different data sources. Multiview learning algorithms try to exploit all these available information to obtain a better learner in such scenarios. In this paper, we propose a novel multiple kernel learning algorithm that extends kernel k-means clustering to the multiview setting, which combines kernels calculated on the views in a localized way to better capture sample-specific characteristics of the data. We demonstrate the better performance of our localized data fusion approach on a human colon and rectal cancer data set by clustering patients. Our method finds more relevant prognostic patient groups than global data fusion methods when we evaluate the results with respect to three commonly used clinical biomarkers.

v2026.09.13